How to name the source, target, ligand/receptor complex

saezlab / liana

LIANA: a LIgand-receptor ANalysis frAmework

https://saezlab.github.io/liana/

GNU General Public License v3.0

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How to name the source, target, ligand/receptor complex #180

Open chaparroeduardo7 opened 1 month ago

chaparroeduardo7 commented 1 month ago

Hi, I am currently running Liana and it is working just fine. The problem I am encountering is that the source, target, ligand/receptor complex are completely changed to numeric identifiers. Sorry if this a very basic question but I haven't been able to find a solution, it's my first time using R or any programming language.

dbdimitrov commented 1 month ago

Hi,

It's very likely that you are not passing your desired cell_type label to idents_col. So, I assume it should be okay, if you pass idents_col='cell_type' to liana_wrap.

Hope this helps.