search

saezlab / liana

LIANA: a LIgand-receptor ANalysis frAmework
https://saezlab.github.io/liana/
GNU General Public License v3.0
182 stars 31 forks source link

get_curated_omni function reports an error #181

Open HMU-lyz opened 1 month ago

HMU-lyz commented 1 month ago

1729737694091 As you can see, I loaded these R packages correctly, but when I run the get_curated_omni function, I get an error. I am not sure what the reason is now. Thank you.

HMU-lyz commented 1 month ago

OmnipathR::import_omnipath_annotations is a good function that can get annotation information of ligand receptor genes in Omnipath, but it does not support direct annotation of Consensus resources in the liana package. However, I only use Consensus resources when predicting cell communication using the liana package. I hope the liana author can optimize this aspect to facilitate the direct call of annotation information of Consensus resources from the liana package.