I encountered an error in the first step of running liana as below:
liana_test <- liana_wrap(testdata2)
Expression from the RNA assay will be used
Running LIANA with seurat_annotations as labels!
Error in exec(output, ...) :
(converted from warning) 3465 genes and/or 0 cells were removed as they had no counts!
-> rlang::last_trace()
<error/rlang_error>
Error:
! Can't create layer without a stat.
Backtrace:
▆
└─ggplot2::layer(testdata)
└─cli::cli_abort("Can't create layer without a stat.", call = call_env)
Hi, Liana team and liana users
I encountered an error in the first step of running liana as below:
liana_test <- liana_wrap(testdata2) Expression from the
RNA
assay will be used Running LIANA withseurat_annotations
as labels! Error in exec(output, ...) : (converted from warning) 3465 genes and/or 0 cells were removed as they had no counts!-> rlang::last_trace() <error/rlang_error> Error: ! Can't create layer without a stat.
Backtrace: ▆
Do you have any idea what is the issue?
Many thanks.