saezlab / liana

LIANA: a LIgand-receptor ANalysis frAmework
https://saezlab.github.io/liana/
GNU General Public License v3.0
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Error in output of liana_wrap #183

Open shiau123 opened 1 day ago

shiau123 commented 1 day ago

Hi, Liana team and liana users

I encountered an error in the first step of running liana as below:

liana_test <- liana_wrap(testdata2) Expression from the RNA assay will be used Running LIANA with seurat_annotations as labels! Error in exec(output, ...) : (converted from warning) 3465 genes and/or 0 cells were removed as they had no counts!

-> rlang::last_trace() <error/rlang_error> Error: ! Can't create layer without a stat.

Backtrace: ▆

  1. └─ggplot2::layer(testdata)
  2. └─cli::cli_abort("Can't create layer without a stat.", call = call_env)
  3. └─rlang::abort(...)

Do you have any idea what is the issue?

Many thanks.

shiau123 commented 13 hours ago

It turns out it is the rlang is too out of update.