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saezlab / liana

LIANA: a LIgand-receptor ANalysis frAmework
https://saezlab.github.io/liana/
GNU General Public License v3.0
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Issue with scconnect #38

Closed austinv11 closed 2 years ago

austinv11 commented 2 years ago

Hello, when I try to use the Scconnect, I get the following error from liana:

Error: trying to get slot "columns" from an object of a basic class ("NULL") with no slots

Is there anything I need to do to prevent this from happening?

dbdimitrov commented 2 years ago

Hi @austinv11,

I implemented scconnect when testing methods in liana, but decided against including it. So, scconnect won't run as only it's scoring function is implemented, but it is not meant to be part of the methods in liana.

You can see the available ones via show_methods().

I will remove the redundant code to avoid any confusion in liana's next update.

Thanks, Daniel

austinv11 commented 2 years ago

Ah, I understand. Thanks for the information.