Issues downloading annotation resources

Hi,

I removed the omnipath cache to redownload many annotation resources using rm $HOME/.cache/omnipathdb/*. After this I tried downloading any of the resources available in Annotations and I'm getting urlib problems, here is a reproducible example:

import omnipath as op

op.requests.Annotations.get(resources='MSigDB', entity_type='protein')

This is the error:

IncompleteRead                            Traceback (most recent call last)
File ~/miniconda3/envs/dcp39/lib/python3.9/site-packages/urllib3/response.py:444, in HTTPResponse._error_catcher(self)
    443 try:
--> 444     yield
    446 except SocketTimeout:
    447     # FIXME: Ideally we'd like to include the url in the ReadTimeoutError but
    448     # there is yet no clean way to get at it from this context.

File ~/miniconda3/envs/dcp39/lib/python3.9/site-packages/urllib3/response.py:831, in HTTPResponse.read_chunked(self, amt, decode_content)
    830     break
--> 831 chunk = self._handle_chunk(amt)
    832 decoded = self._decode(
    833     chunk, decode_content=decode_content, flush_decoder=False
    834 )

File ~/miniconda3/envs/dcp39/lib/python3.9/site-packages/urllib3/response.py:775, in HTTPResponse._handle_chunk(self, amt)
    774 elif amt < self.chunk_left:
--> 775     value = self._fp._safe_read(amt)
    776     self.chunk_left = self.chunk_left - amt

File ~/miniconda3/envs/dcp39/lib/python3.9/http/client.py:628, in HTTPResponse._safe_read(self, amt)
    627 if not chunk:
--> 628     raise IncompleteRead(b''.join(s), amt)
    629 s.append(chunk)

IncompleteRead: IncompleteRead(7827 bytes read, 369 more expected)

I tried it with different resource names just to check if it might be a database specific problem but the same error happens. I have access to internet connection too and I'm working on my laptop (not in a server).

These are the versions I'm running:

python 3.9.15
urllib3 1.26.13
omnipath 1.0.6

Could it be that the omnipath server is down?

saezlab / omnipath

Issues downloading annotation resources #32