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saezlab / plugy

Flexible processing and analysis of plug microfluidics data
GNU General Public License v3.0
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Condition (drug) top list #5

Open deeenes opened 1 year ago

deeenes commented 1 year ago

Give a result table for ranked drug treatments, based on the chosen fold change/z-score difference (to medium control) and/or based on the chosen p-value

deeenes commented 1 year ago

Conditions can be ranked by any combination of variables, using the sort_by argument of stats_table. See more details in #6.

deeenes commented 1 year ago

Btw, how would you calculate fold change? @NgocHien-Du

NgocHien-Du commented 1 year ago

The fold change vs control medium, so it would be the ratio of the raw signal between treatment vs control. Depending on what the user chooses, it could be either just the green signal, just the orange signal, or green/orange signal. The same for zscore, just that for zscore it would be the difference and not the ratio, because ratio does not make sense.