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saezlab / plugy

Flexible processing and analysis of plug microfluidics data
GNU General Public License v3.0
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Export by condition summay table #6

Open deeenes opened 2 years ago

deeenes commented 2 years ago

Give summarized statistics table of drug treatments as in the table below. One table that has cycles separated, and one that averages all cycles (almost same as #5)

deeenes commented 2 years ago

By condition statistics can be generated using the stats_table function, and exported to TSV or XLSX by the stats_table_tsv or stats_table_excel functions. See the docs for details. One TSV table is exported in the analysis step of the workflow.

NgocHien-Du commented 2 years ago

Is the function included in the config? Or do we have to call it separately?

deeenes commented 2 years ago

Export of a TSV table is included in the analysis step of the workflow. To export different format, or with different settings, call the PlugExperiment.stats_table_tsv or PlugExperiment.stats_table_excel functions in your script.

You can also let me know which exports should be included in the workflow by default.

NgocHien-Du commented 1 year ago

We do not know yet which exports is the best for the default so just leave it is out for the moment. We can export manually and explore what is the best.