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saezlab / plugy

Flexible processing and analysis of plug microfluidics data
GNU General Public License v3.0
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More plug length figures #7

Closed deeenes closed 1 year ago

deeenes commented 1 year ago

In the QC folder, plot plug length for each drug treatment, by each cycle, and averaging all cycles

deeenes commented 1 year ago

What kind of plot? A grid of violins, boxplots, or densities?

NgocHien-Du commented 1 year ago

Boxplots or violinplot would be great.

deeenes commented 1 year ago

Now the plug sizes can be plotted also as boxplots and also by cycle:

volumes_boxplot

We have already had density plots about plug sizes, and a pair grid where we can check the sizes against almost any of the variables:

volumes_density

lengths_grid

These figures are generated in the qc step of the workflow, both with length in seconds and volume in nanolitres. Actually this pair grid also gives information about the cycles.

NgocHien-Du commented 1 year ago

No, I want an extra figure with plug lengths for each sample. The question is if the plug length for each sample are equal, or if there are some outliers. We can use this information to check if the liquid are running well in the microfluidic for each channel. So if some outliers are label, that would be great. Can we also have a sum of the length of plugs for each sample? Sometimes we would have smaller plugs for certain condition, but may be the sum of the length will be the same, which is still fine.

deeenes commented 1 year ago

Okay, now I understand. I added two new figures to the workflow, length_by_sample and volume_by_sample:

length_by_sample

NgocHien-Du commented 1 year ago

That is lovely. Thanks!