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saezlab / progeny-py

PROGENY Python implementation
MIT License
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More pathways? #4

Open HaikuoLi opened 2 years ago

HaikuoLi commented 2 years ago

Hello!

I found there are only 14 pathways in the current package. Is there a way to incorporate more from any pathway databases? Do you plan to add more in the future version?

Thank you in advance!

PauBadiaM commented 2 years ago

Hi @HaikuoLi, thanks for checking out the package!

I found there are only 14 pathways in the current package. Is there a way to incorporate more from any pathway databases?

Unfortunately, adding pathways from other databases is not straightforward since we would need enough data to compute their gene weights.

Do you plan to add more in the future version?

Yes, we have plans to expand the number of pathways in the future although for now it is on hold.

Cheers!