search

saezlab / progeny

R package for Pathway RespOnsive GENe activity inference
https://saezlab.github.io/progeny/
Apache License 2.0
90 stars 19 forks source link

Return Gene List from progenyScatter #45

Open HocheolJang426 opened 2 years ago

HocheolJang426 commented 2 years ago

Hi

I'm really enjoying your wonderful package, progeny

In pathway enrichment analysis and following progenyScatter, I can plot genes according to pathway. I show the result of my analysis below; image I'm wondering I can get the list of gene names shown on figure In this analysis, ISG15, MX1, IFI44L... I checked the arguments that consist progenyScatter, I can't find any gene names How can I return gene names from progenyScatter and each pathway?

adugourd commented 2 years ago

Hi,

thanks for your interest in the tool :)

You can find those genes in the weight matrix of progeny. You can get the weight matrix by using the function progeny::getModel()

Cheers,

Aurelien