Would you mind releasing scripts related to cell cycle score?

saezlab / visium_heart

Spatial transcriptomics of heart tissue

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Would you mind releasing scripts related to cell cycle score? #6

Closed wangyiqing50 closed 2 years ago

wangyiqing50 commented 2 years ago

Hi, I am reading the paper and find it a very informative manuscript. I was wondering if I can check the code on how exactly the cell cycle score was calculated.

roramirezf commented 2 years ago

Sorry for the delay,

I have added the missing script here: https://github.com/saezlab/visium_heart/blob/master/st_snRNAseq/02_snuc_integration_harmony/estimate_cellcycle.R

It is based on Seurat's annotation.

Cheers