saga-project / bliss

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pbs plugin fails on Kraken. #60

Closed pradeepmantha closed 12 years ago

pradeepmantha commented 12 years ago

Hi!

I am getting below error, when bliss pbs://localhost url is used on Kraken. Latest version of bliss and BigJob are used.

(mypython_repo)pmantha@kraken-gsi3:~> python example_date.py 06/13/2012 01:58:08 PM - PBSJobPlugin - ERROR - Couldn't run job because: Error running 'qsub': Warning: Your job uses the -V option, which requests that all of your current shell environment settings (10277 bytes) be exported to it. This is not recommended, as it causes problems for the batch environment in some cases. You are strongly encouraged to remove the -V option from your batch job. If needed, export individual environment variables with the -v variable_list directive instead. See the qsub man page for details

Please contact help@xsede.org if you need assistance.

Notice: Your job was NOT submitted

Kraken requires processor core requests to be of the form size=N. However, your job instead requests cores in the form nodes=N. Please correct your job and resubmit.

Please see the following URL for more information: http://www.nics.tennessee.edu/computing-resources/kraken

Please contact help@xsede.org if you need assistance.

qsub: Your job has been administratively rejected by the queueing system. qsub: There may be a more detailed explanation prior to this notice. . Script was:

!/bin/bash

PBS -N bliss_job

PBS -V

PBS -d /lustre/scratch/pmantha/agent/

PBS -o /lustre/scratch/pmantha/agent/stdout-bj-54af49ca-b581-11e1-8ef6-00003ea40000-agent.txt

PBS -e /lustre/scratch/pmantha/agent/stderr-bj-54af49ca-b581-11e1-8ef6-00003ea40000-agent.txt

PBS -l walltime=0:10:00

PBS -q small

PBS -A TG-MCB090174

PBS -l nodes=1:ppn=128

/usr/bin/env python -c "import sys import os import urllib import sys import time start_time = time.time() home = os.environ.get(\"HOME\")

oweidner commented 12 years ago

Hi Pradeep,

can you please try xt5torque://localhost and see if it works?

Thanks, Ole

On Jun 13, 2012, at 1:01 PM, pradeepmantha wrote:

Hi!

I am getting below error, when bliss pbs://localhost url is used on Kraken. Latest version of bliss and BigJob are used.

(mypython_repo)pmantha@kraken-gsi3:~> python example_date.py 06/13/2012 01:58:08 PM - PBSJobPlugin - ERROR - Couldn't run job because: Error running 'qsub': Warning: Your job uses the -V option, which requests that all of your current shell environment settings (10277 bytes) be exported to it. This is not recommended, as it causes problems for the batch environment in some cases. You are strongly encouraged to remove the -V option from your batch job. If needed, export individual environment variables with the -v variable_list directive instead. See the qsub man page for details

Please contact help@xsede.org if you need assistance.

Notice: Your job was NOT submitted

Kraken requires processor core requests to be of the form size=N. However, your job instead requests cores in the form nodes=N. Please correct your job and resubmit.

Please see the following URL for more information: http://www.nics.tennessee.edu/computing-resources/kraken

Please contact help@xsede.org if you need assistance.

qsub: Your job has been administratively rejected by the queueing system. qsub: There may be a more detailed explanation prior to this notice. . Script was:

!/bin/bash

PBS -N bliss_job

PBS -V

PBS -d /lustre/scratch/pmantha/agent/

PBS -o /lustre/scratch/pmantha/agent/stdout-bj-54af49ca-b581-11e1-8ef6-00003ea40000-agent.txt

PBS -e /lustre/scratch/pmantha/agent/stderr-bj-54af49ca-b581-11e1-8ef6-00003ea40000-agent.txt

PBS -l walltime=0:10:00

PBS -q small

PBS -A TG-MCB090174

PBS -l nodes=1:ppn=128

/usr/bin/env python -c "import sys import os import urllib import sys import time start_time = time.time() home = os.environ.get(\"HOME\")


Reply to this email directly or view it on GitHub: https://github.com/saga-project/bliss/issues/60

pradeepmantha commented 12 years ago

Yes it works. I am not sure whether pbs should work or not. If not, please close this issue.