Closed 6bdad4c1-1e26-4f2f-a442-a01a2292c181 closed 9 years ago
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago Description changed:
---
+++
@@ -1,4 +1,6 @@
With this branch, running "sage -t" will automatically involve testing all locally installed optional packages.
+
+Of course, setting "--optional=X" only tests the packages listed in `X`.
In the short term: many broken doctests that we did not notice
In the long term: more reliable optional packagesBranch: u/ncohen/18558
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago Commit: dd586b9
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago 
jdemeyer
commented
9 years ago See also #13540.
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago See also #13540.
Cool, a 3 years old ticket without a branch. I will drop them a line.
Nathann
jdemeyer
commented
9 years ago Replying to @nathanncohen:
See also #13540.
Cool, a 3 years old ticket without a branch.
Well, there is a patch.
jdemeyer
commented
9 years ago Note that tests for the cbc package are marked # optional - Coin so I guess this needs to be fixed.
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago Well, there is a patch.
It is two years old only. Which do you prefer to review, theirs or mine? :-P
Note that tests for the cbc package are marked # optional - Coin so I guess this needs to be fixed.
True, I will create another ticket in a second (done: #18559)
Nathann
jdemeyer
commented
9 years ago Instead of patching sage-runtests, patch the doctest framework, and add some doctests.
jdemeyer
commented
9 years ago And instead of naming the option sage_and_installed_packages, I would prefer to have an option like alloptional (all installed optional packages), so one can do --optional=sage,alloptional,internet (which is not possible with your patch).
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago I did not patch the doctest framework because the default value of 'optional' is systematically overwritten by sage-runtests. As for 'add some doctest', I do not understand what you mean so be more specific.
jdemeyer
commented
9 years ago Replying to @nathanncohen:
I did not patch the doctest framework because the default value of 'optional' is systematically overwritten by
sage-runtests.
What do you mean with this? The sage-runtests script is really a very thin front-end for the doctest framework in the Sage library, it doesn't parse the value of the --optional option.
jdemeyer
commented
9 years ago Replying to @nathanncohen:
As for 'add some doctest', I do not understand what you mean so be more specific.
I meant "add a doctest in the doctest framework", but I admit I haven't thought much about what this should be.
jdemeyer
commented
9 years ago On the topic of the option name: make it just optional instead of alloptional. So the default value should be --optional=sage,optional.
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago What do you mean with this? The
sage-runtestsscript is really a very thin front-end for the doctest framework in the Sage library, it doesn't parse the value of the--optionaloption.
I mean that I was surprised to find that the DocTestDefaults class is not even instanciated when you run doctests.
7ed8c4ca-6d56-4ae9-953a-41e42b4ed313
commented
9 years ago Branch pushed to git repo; I updated commit sha1. New commits:
e45591a | trac #18558: now with an 'installed_optional' keyword |
7ed8c4ca-6d56-4ae9-953a-41e42b4ed313
commented
9 years ago 6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago There is now an installed_optional tag which gets replaced by the list of all (installed) optional packages. The replacement is done in doctest.py.
Nathann
jdemeyer
commented
9 years ago Changed dependencies from #18456 to #18456, #18124
vbraun
commented
9 years ago Is there going to be a separate installed_experimental keyword? If not then it would be better to shorten it; Just --optional=optional (somewhat confusing) or --optional=installed. Imho the latter is best since its obvious enough that it refers to packages installed by Sage. It would also fit nicely with auto-detection on #13540, which would then be --optional=auto.
jdemeyer
commented
9 years ago What are you going to do with all the current failing optional tests? Mark them as # known bug, open tickets to fix them,...?
vbraun
commented
9 years ago Imho: let them fail, its not the job of this ticket to clear that up. Also, will only fail if you actually install optional packages. And you can switch it off with --optional=sage.
jdemeyer
commented
9 years ago Replying to @vbraun:
its not the job of this ticket to clear that up.
No, but it's the job of every ticket to ensure that the ticket does not make doctests fail. I think it will be very confusing when we get lots of reports that make ptest fails just somebody installed an optional package. At least, those make targets should use --optional=sage then. Alternatively, mark failing tests as # known bug.
jdemeyer
commented
9 years ago sage -t --long src/sage/geometry/triangulation/point_configuration.py
**********************************************************************
File "src/sage/geometry/triangulation/point_configuration.py", line 88, in sage.geometry.triangulation.point_configuration
Failed example:
regular = p.restrict_to_regular_triangulations(True).triangulations_list() # optional - TOPCOM
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.geometry.triangulation.point_configuration[19]>", line 1, in <module>
regular = p.restrict_to_regular_triangulations(True).triangulations_list() # optional - TOPCOM
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/geometry/triangulation/point_configuration.py", line 1016, in triangulations_list
return list(self.triangulations(verbose))
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/geometry/triangulation/point_configuration.py", line 983, in triangulations
raise ValueError('Need TOPCOM to test for regularity.')
ValueError: Need TOPCOM to test for regularity.
**********************************************************************
File "src/sage/geometry/triangulation/point_configuration.py", line 89, in sage.geometry.triangulation.point_configuration
Failed example:
nonregular = p.restrict_to_regular_triangulations(False).triangulations_list() # optional - TOPCOM
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.geometry.triangulation.point_configuration[20]>", line 1, in <module>
nonregular = p.restrict_to_regular_triangulations(False).triangulations_list() # optional - TOPCOM
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/geometry/triangulation/point_configuration.py", line 1016, in triangulations_list
return list(self.triangulations(verbose))
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/geometry/triangulation/point_configuration.py", line 983, in triangulations
raise ValueError('Need TOPCOM to test for regularity.')
ValueError: Need TOPCOM to test for regularity.
**********************************************************************
File "src/sage/geometry/triangulation/point_configuration.py", line 90, in sage.geometry.triangulation.point_configuration
Failed example:
len(regular) # optional - TOPCOM
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.geometry.triangulation.point_configuration[21]>", line 1, in <module>
len(regular) # optional - TOPCOM
NameError: name 'regular' is not defined
**********************************************************************
File "src/sage/geometry/triangulation/point_configuration.py", line 92, in sage.geometry.triangulation.point_configuration
Failed example:
len(nonregular) # optional - TOPCOM
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.geometry.triangulation.point_configuration[22]>", line 1, in <module>
len(nonregular) # optional - TOPCOM
NameError: name 'nonregular' is not defined
**********************************************************************
File "src/sage/geometry/triangulation/point_configuration.py", line 94, in sage.geometry.triangulation.point_configuration
Failed example:
nonregular[0].plot(aspect_ratio=1, axes=False) # optional - TOPCOM
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.geometry.triangulation.point_configuration[23]>", line 1, in <module>
nonregular[Integer(0)].plot(aspect_ratio=Integer(1), axes=False) # optional - TOPCOM
NameError: name 'nonregular' is not defined
**********************************************************************
File "src/sage/geometry/triangulation/point_configuration.py", line 687, in sage.geometry.triangulation.point_configuration.PointConfiguration._TOPCOM_triangulations
Failed example:
next(iter) # optional - TOPCOM
Expected:
#### TOPCOM input ####
# points2triangs
# [[0,0,1],[0,1,1],[1,0,1],[1,1,1],[-1,-1,1]]
#### TOPCOM output ####
# T[1]:=[5,3:{{0,1,2},{1,2,3},{0,2,4},{0,1,4}}];
(<0,1,2>, <0,1,4>, <0,2,4>, <1,2,3>)
Got:
#### TOPCOM input ####
# points2triangs
# [[0,0,1],[0,1,1],[1,0,1],[1,1,1],[-1,-1,1]]
#### TOPCOM output ####
# T[0]:=[0->5,3:{{0,1,2},{1,2,3},{0,2,4},{0,1,4}}];
(<0,1,2>, <0,1,4>, <0,2,4>, <1,2,3>)
**********************************************************************
File "src/sage/geometry/triangulation/point_configuration.py", line 783, in sage.geometry.triangulation.point_configuration.PointConfiguration.restrict_to_regular_triangulations
Failed example:
len(p_regular.triangulations_list()) # optional - TOPCOM
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.geometry.triangulation.point_configuration.PointConfiguration.restrict_to_regular_triangulations[4]>", line 1, in <module>
len(p_regular.triangulations_list()) # optional - TOPCOM
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/geometry/triangulation/point_configuration.py", line 1016, in triangulations_list
return list(self.triangulations(verbose))
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/geometry/triangulation/point_configuration.py", line 983, in triangulations
raise ValueError('Need TOPCOM to test for regularity.')
ValueError: Need TOPCOM to test for regularity.
**********************************************************************
File "src/sage/geometry/triangulation/point_configuration.py", line 826, in sage.geometry.triangulation.point_configuration.PointConfiguration.restrict_to_connected_triangulations
Failed example:
len(p_all.triangulations_list()) # optional - TOPCOM
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.geometry.triangulation.point_configuration.PointConfiguration.restrict_to_connected_triangulations[4]>", line 1, in <module>
len(p_all.triangulations_list()) # optional - TOPCOM
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/geometry/triangulation/point_configuration.py", line 1016, in triangulations_list
return list(self.triangulations(verbose))
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/geometry/triangulation/point_configuration.py", line 981, in triangulations
raise ValueError('Need TOPCOM to find disconnected triangulations.')
ValueError: Need TOPCOM to find disconnected triangulations.
**********************************************************************
4 items had failures:
5 of 33 in sage.geometry.triangulation.point_configuration
1 of 4 in sage.geometry.triangulation.point_configuration.PointConfiguration._TOPCOM_triangulations
1 of 7 in sage.geometry.triangulation.point_configuration.PointConfiguration.restrict_to_connected_triangulations
1 of 7 in sage.geometry.triangulation.point_configuration.PointConfiguration.restrict_to_regular_triangulations
[239 tests, 8 failures, 23.36 s]
sage -t --long src/doc/en/thematic_tutorials/sandpile.rst
**********************************************************************
File "src/doc/en/thematic_tutorials/sandpile.rst", line 695, in doc.en.thematic_tutorials.sandpile
Failed example:
p[0] # optional - 4ti2
Expected:
[{0: -8, 1: 5, 2: 4, 3: 1},
Simplicial complex with vertex set (0, 1, 2, 3) and facets {(1, 2), (3,)}]
Got:
[{0: -8, 1: 5, 2: 4, 3: 1},
Simplicial complex with vertex set (1, 2, 3) and facets {(1, 2), (3,)}]
**********************************************************************
File "src/doc/en/thematic_tutorials/sandpile.rst", line 706, in doc.en.thematic_tutorials.sandpile
Failed example:
D.Dcomplex() # optional - 4ti2
Expected:
Simplicial complex with vertex set (0, 1, 2, 3) and facets {(1, 2), (3,)}
Got:
Simplicial complex with vertex set (1, 2, 3) and facets {(1, 2), (3,)}
**********************************************************************
File "src/doc/en/thematic_tutorials/sandpile.rst", line 1078, in doc.en.thematic_tutorials.sandpile
Failed example:
p[0] # optional - 4ti2
Expected:
[{0: -8, 1: 5, 2: 4, 3: 1},
Simplicial complex with vertex set (0, 1, 2, 3) and facets {(1, 2), (3,)}]
Got:
[{0: -8, 1: 5, 2: 4, 3: 1},
Simplicial complex with vertex set (1, 2, 3) and facets {(1, 2), (3,)}]
**********************************************************************
File "src/doc/en/thematic_tutorials/sandpile.rst", line 3623, in doc.en.thematic_tutorials.sandpile
Failed example:
D.effective_div() # optional - 4ti2
Expected:
[{0: 1, 1: 0, 2: 0, 3: 1, 4: 0, 5: 0},
{0: 0, 1: 0, 2: 1, 3: 1, 4: 0, 5: 0},
{0: 0, 1: 0, 2: 0, 3: 0, 4: 0, 5: 2}]
Got:
[{0: 0, 1: 0, 2: 1, 3: 1, 4: 0, 5: 0},
{0: 1, 1: 0, 2: 0, 3: 1, 4: 0, 5: 0},
{0: 0, 1: 0, 2: 0, 3: 0, 4: 0, 5: 2}]
**********************************************************************
File "src/doc/en/thematic_tutorials/sandpile.rst", line 3627, in doc.en.thematic_tutorials.sandpile
Failed example:
D.effective_div(False) # optional - 4ti2
Expected:
[[1, 0, 0, 1, 0, 0], [0, 0, 1, 1, 0, 0], [0, 0, 0, 0, 0, 2]]
Got:
[[0, 0, 1, 1, 0, 0], [1, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 2]]
**********************************************************************
File "src/doc/en/thematic_tutorials/sandpile.rst", line 3779, in doc.en.thematic_tutorials.sandpile
Failed example:
D.linear_system() # optional - 4ti2
Expected:
{'inhomog': [[0, 0, -1, -1, 0, -2], [0, 0, 0, 0, 0, -1], [0, 0, 0, 0, 0, 0]],
'num_inhomog': 3, 'num_homog': 2, 'homog': [[1, 0, 0, 0, 0, 0],
[-1, 0, 0, 0, 0, 0]]}
Got:
{'homog': [[1, 0, 0, 0, 0, 0], [-1, 0, 0, 0, 0, 0]],
'inhomog': [[0, 0, 0, 0, 0, -1], [0, 0, -1, -1, 0, -2], [0, 0, 0, 0, 0, 0]],
'num_homog': 2,
'num_inhomog': 3}
**********************************************************************
1 item had failures:
6 of 584 in doc.en.thematic_tutorials.sandpile
[583 tests, 6 failures, 26.44 s]
sage -t --long src/sage/symbolic/integration/integral.py
**********************************************************************
File "src/sage/symbolic/integration/integral.py", line 528, in sage.symbolic.integration.integral.integrate
Failed example:
integrate(f(x), x, algorithm="fricas") # optional - fricas
Expected:
2*sqrt(x + sqrt(x^2 + 1)) + log(sqrt(x + sqrt(x^2 + 1)) - 1)
- log(sqrt(x + sqrt(x^2 + 1)) + 1) - 2*arctan(sqrt(x + sqrt(x^2 + 1)))
Got:
2*sqrt(x + sqrt(x^2 + 1)) - 2*arctan(sqrt(x + sqrt(x^2 + 1))) - log(sqrt(x + sqrt(x^2 + 1)) + 1) + log(sqrt(x + sqrt(x^2 + 1)) - 1)
**********************************************************************
File "src/sage/symbolic/integration/integral.py", line 541, in sage.symbolic.integration.integral.integrate
Failed example:
integrate(f(x), x, 1, 2, algorithm="fricas") # optional - fricas
Expected:
-1/2*pi + arctan(1/2) + arctan(2) + arctan(5) + arctan(8)
Got:
-1/2*pi + arctan(8) + arctan(5) + arctan(2) + arctan(1/2)
**********************************************************************
1 item had failures:
2 of 118 in sage.symbolic.integration.integral.integrate
[161 tests, 2 failures, 23.00 s]
sage -t --long src/sage/graphs/graph_generators.py
**********************************************************************
File "src/sage/graphs/graph_generators.py", line 1145, in sage.graphs.graph_generators.GraphGenerators.fullerenes
Failed example:
g.plot3d(layout='spring') # optional buckygen
Expected nothing
Got:
Graphics3d Object
**********************************************************************
1 item had failures:
1 of 11 in sage.graphs.graph_generators.GraphGenerators.fullerenes
[140 tests, 1 failure, 24.39 s]
sage -t --long src/sage/coding/linear_code.py
**********************************************************************
File "src/sage/coding/linear_code.py", line 1457, in sage.coding.linear_code.AbstractLinearCode.decode
Failed example:
C.decode(v, algorithm="guava") # optional - gap_packages (Guava package)
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.coding.linear_code.AbstractLinearCode.decode[20]>", line 1, in <module>
C.decode(v, algorithm="guava") # optional - gap_packages (Guava package)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/coding/linear_code.py", line 1481, in decode
result = gap.Decodeword(code, right_word)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/interface.py", line 534, in __call__
return self._parent.function_call(self._name, list(args), kwds)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/gap.py", line 893, in function_call
['%s=%s'%(key,value.name()) for key, value in kwds.items()])))
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/gap.py", line 568, in eval
result = Expect.eval(self, input_line, **kwds)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/expect.py", line 1221, in eval
for L in code.split('\n') if L != ''])
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/gap.py", line 766, in _eval_line
raise RuntimeError(message)
RuntimeError: Gap produced error output
Error, List Element: <list>[2] must have an assigned value
executing Decodeword($sage26,$sage24);
**********************************************************************
File "src/sage/coding/linear_code.py", line 2356, in sage.coding.linear_code.AbstractLinearCode.permutation_automorphism_group
Failed example:
C.permutation_automorphism_group(algorithm="gap") # optional - gap_packages (Guava package)
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.coding.linear_code.AbstractLinearCode.permutation_automorphism_group[27]>", line 1, in <module>
C.permutation_automorphism_group(algorithm="gap") # optional - gap_packages (Guava package)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/coding/linear_code.py", line 2397, in permutation_automorphism_group
A = gap("MatrixAutomorphisms(matCwt)")
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/interface.py", line 170, in __call__
return cls(self, x, name=name)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/expect.py", line 1304, in __init__
self._name = parent._create(value, name=name)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/interface.py", line 360, in _create
self.set(name, value)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/gap.py", line 1298, in set
self._eval_line(cmd, allow_use_file=True)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/gap.py", line 766, in _eval_line
raise RuntimeError(message)
TypeError: Gap produced error output
Error, no method found! For debugging hints type ?Recovery from NoMethodFound
Error, no 1st choice method found for `MatrixAutomorphisms' on 1 arguments
executing $sage30:=MatrixAutomorphisms(matCwt);;
**********************************************************************
File "src/sage/coding/linear_code.py", line 2358, in sage.coding.linear_code.AbstractLinearCode.permutation_automorphism_group
Failed example:
C.permutation_automorphism_group(algorithm="gap") # optional - gap_packages (Guava package)
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.coding.linear_code.AbstractLinearCode.permutation_automorphism_group[29]>", line 1, in <module>
C.permutation_automorphism_group(algorithm="gap") # optional - gap_packages (Guava package)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/coding/linear_code.py", line 2397, in permutation_automorphism_group
A = gap("MatrixAutomorphisms(matCwt)")
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/interface.py", line 170, in __call__
return cls(self, x, name=name)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/expect.py", line 1304, in __init__
self._name = parent._create(value, name=name)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/interface.py", line 360, in _create
self.set(name, value)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/gap.py", line 1298, in set
self._eval_line(cmd, allow_use_file=True)
File "/usr/local/src/sage-config/local/lib/python2.7/site-packages/sage/interfaces/gap.py", line 766, in _eval_line
raise RuntimeError(message)
TypeError: Gap produced error output
Error, no method found! For debugging hints type ?Recovery from NoMethodFound
Error, no 1st choice method found for `MatrixAutomorphisms' on 1 arguments
executing $sage17:=MatrixAutomorphisms(matCwt);;
**********************************************************************
2 items had failures:
1 of 23 in sage.coding.linear_code.AbstractLinearCode.decode
2 of 31 in sage.coding.linear_code.AbstractLinearCode.permutation_automorphism_group
[456 tests, 3 failures, 9.84 s]
sage -t --long src/sage/rings/real_mpfr.pyx
**********************************************************************
File "src/sage/rings/real_mpfr.pyx", line 3012, in sage.rings.real_mpfr.RealNumber._axiom_
Failed example:
fricas(R(pi)) # optional - fricas
Expected:
3.1415926535 8979323846 26433833
Got:
3.1415926535_8979323846_26433833
**********************************************************************
1 item had failures:
1 of 4 in sage.rings.real_mpfr.RealNumber._axiom_
[957 tests, 1 failure, 2.88 s]
sage -t --long src/sage/rings/infinity.py
**********************************************************************
File "src/sage/rings/infinity.py", line 277, in sage.rings.infinity.AnInfinity._fricas_init_
Failed example:
fricas(-oo) # optional - fricas
Expected:
%minusInfinity
Got:
- infinity
**********************************************************************
1 item had failures:
1 of 3 in sage.rings.infinity.AnInfinity._fricas_init_
[280 tests, 1 failure, 2.42 s]
sage -t --long src/sage/geometry/polyhedron/base_ZZ.py
**********************************************************************
File "src/sage/geometry/polyhedron/base_ZZ.py", line 223, in sage.geometry.polyhedron.base_ZZ.Polyhedron_ZZ.?
Failed example:
p = P.ehrhart_polynomial(maxdet=5, verbose=True) # optional - latte_int
Expected:
This is LattE integrale 1.7.2
...
Invocation: count --ehrhart-polynomial '--redundancy-check=none' '--maxdet=5' --cdd ...
...
Got:
This is LattE integrale 1.7.3
Available from http://www.math.ucdavis.edu/~latte/
<BLANKLINE>
Invocation: count --ehrhart-polynomial '--redundancy-check=none' '--maxdet=5' --cdd /home/jdemeyer/.sage/temp/tamiyo/6258/tmp_GWXqbS.ine
Warning: Not performing check for empty polytope, because it is unimplemented for the CDD-style input format.
size = 4 x 4
Number Type = rational
Ax <= b, given as (b|-A):
=========================
[1 -1 1 0]
[-1 2 -1 0]
[1 1 -2 0]
<BLANKLINE>
Ax = b, given as (b|-A):
========================
[-1 2 -1 -3]
<BLANKLINE>
Computing hermitean normal form.
sol:
[-1 0 0]
Particular solution:
Basis:
New inequalities:
[0 1 -3 0]
[0 0 3 0]
[3 -3 6 0]
Time for reading and preprocessing: 0 sec
The polytope has 3 vertices.
Time for computing vertices and supporting cones: 0 sec
Time for dualizing general cones: 0 sec
Dualizing all cones...All cones are now dualized.
Time for dualizing general cones: 0 sec
Triangulating cone... done.
0 vertex cones done.
Triangulating cone... done.
1 vertex cones done.
Triangulating cone... done.
2 vertex cones done.
<BLANKLINE>
Ehrhart polynomial: Total time: 0 sec
**********************************************************************
File "src/sage/geometry/polyhedron/base_ZZ.py", line 231, in sage.geometry.polyhedron.base_ZZ.Polyhedron_ZZ.?
Failed example:
p = P.ehrhart_polynomial(dual=True, verbose=True) # optional - latte_int
Expected:
This is LattE integrale 1.7.2
...
Invocation: count --ehrhart-polynomial '--redundancy-check=none' --dual --cdd ...
...
Got:
This is LattE integrale 1.7.3
Available from http://www.math.ucdavis.edu/~latte/
<BLANKLINE>
Invocation: count --ehrhart-polynomial '--redundancy-check=none' --dual --cdd /home/jdemeyer/.sage/temp/tamiyo/6258/tmp_61Y455.ine
Warning: Not performing check for empty polytope, because it is unimplemented for the CDD-style input format.
size = 4 x 4
Number Type = rational
Ax <= b, given as (b|-A):
=========================
[1 -1 1 0]
[-1 2 -1 0]
[1 1 -2 0]
<BLANKLINE>
Ax = b, given as (b|-A):
========================
[-1 2 -1 -3]
<BLANKLINE>
Computing hermitean normal form.
sol:
[-1 0 0]
Particular solution:
Basis:
New inequalities:
[0 1 -3 0]
[0 0 3 0]
[3 -3 6 0]
Time for reading and preprocessing: 0 sec
The polytope has 3 vertices.
Time for computing vertices and supporting cones: 0 sec
Time for dualizing general cones: 0 sec
Dualizing all cones...All cones are now dualized.
Time for dualizing general cones: 0 sec
Triangulating cone... done.
0 vertex cones done.
Triangulating cone... done.
1 vertex cones done.
Triangulating cone... done.
2 vertex cones done.
<BLANKLINE>
Ehrhart polynomial: Total time: 0 sec
**********************************************************************
File "src/sage/geometry/polyhedron/base_ZZ.py", line 239, in sage.geometry.polyhedron.base_ZZ.Polyhedron_ZZ.?
Failed example:
p = P.ehrhart_polynomial(irrational_primal=True, verbose=True) # optional - latte_int
Expected:
This is LattE integrale 1.7.2
...
Invocation: count --ehrhart-polynomial '--redundancy-check=none' --irrational-primal --cdd ...
...
Got:
This is LattE integrale 1.7.3
Available from http://www.math.ucdavis.edu/~latte/
<BLANKLINE>
Invocation: count --ehrhart-polynomial '--redundancy-check=none' --irrational-primal --cdd /home/jdemeyer/.sage/temp/tamiyo/6258/tmp_WjZNI4.ine
Warning: Not performing check for empty polytope, because it is unimplemented for the CDD-style input format.
size = 4 x 4
Number Type = rational
Ax <= b, given as (b|-A):
=========================
[1 -1 1 0]
[-1 2 -1 0]
[1 1 -2 0]
<BLANKLINE>
Ax = b, given as (b|-A):
========================
[-1 2 -1 -3]
<BLANKLINE>
Computing hermitean normal form.
sol:
[-1 0 0]
Particular solution:
Basis:
New inequalities:
[0 1 -3 0]
[0 0 3 0]
[3 -3 6 0]
Time for reading and preprocessing: 0 sec
The polytope has 3 vertices.
Time for computing vertices and supporting cones: 0 sec
Time for dualizing general cones: 0 sec
Dualizing all cones...All cones are now dualized.
Time for dualizing general cones: 0 sec
Triangulating cone... done.
0 vertex cones done.
Triangulating cone... done.
1 vertex cones done.
Triangulating cone... done.
2 vertex cones done.
<BLANKLINE>
Ehrhart polynomial: Total time: 0 sec
**********************************************************************
File "src/sage/geometry/polyhedron/base_ZZ.py", line 247, in sage.geometry.polyhedron.base_ZZ.Polyhedron_ZZ.?
Failed example:
p = P.ehrhart_polynomial(irrational_all_primal=True, verbose=True) # optional - latte_int
Expected:
This is LattE integrale 1.7.2
...
Invocation: count --ehrhart-polynomial '--redundancy-check=none' --irrational-all-primal --cdd ...
Got:
This is LattE integrale 1.7.3
Available from http://www.math.ucdavis.edu/~latte/
<BLANKLINE>
Invocation: count --ehrhart-polynomial '--redundancy-check=none' --irrational-all-primal --cdd /home/jdemeyer/.sage/temp/tamiyo/6258/tmp_Lhrv_b.ine
Warning: Not performing check for empty polytope, because it is unimplemented for the CDD-style input format.
size = 4 x 4
Number Type = rational
Ax <= b, given as (b|-A):
=========================
[1 -1 1 0]
[-1 2 -1 0]
[1 1 -2 0]
<BLANKLINE>
Ax = b, given as (b|-A):
========================
[-1 2 -1 -3]
<BLANKLINE>
Computing hermitean normal form.
sol:
[-1 0 0]
Particular solution:
Basis:
New inequalities:
[0 1 -3 0]
[0 0 3 0]
[3 -3 6 0]
Time for reading and preprocessing: 0 sec
The polytope has 3 vertices.
Time for computing vertices and supporting cones: 0 sec
Time for dualizing general cones: 0 sec
Irrationalizing polyhedral cones... (First computing their rays... Dualizing all cones...All cones are now dualized.
Time for dualizing general cones: 0 sec
Dualizing all cones...All cones are now dualized.
Time for dualizing general cones: 0 sec
done; sorry for the interruption.) Time for irrationalizing general cones: 0 sec
Triangulating cone... done.
0 vertex cones done.
Triangulating cone... done.
1 vertex cones done.
Triangulating cone... done.
2 vertex cones done.
<BLANKLINE>
Ehrhart polynomial: Total time: 0 sec
**********************************************************************
1 item had failures:
4 of 27 in sage.geometry.polyhedron.base_ZZ.Polyhedron_ZZ.?
[67 tests, 4 failures, 1.39 s]
sage -t --long src/sage/symbolic/integration/external.py
**********************************************************************
File "src/sage/symbolic/integration/external.py", line 86, in sage.symbolic.integration.external.fricas_integrator
Failed example:
fricas_integrator(1/(x^2-2), x, 0, 1) # optional - fricas
Expected:
1/4*(log(3*sqrt(2) - 4) - log(sqrt(2)))*sqrt(2)
Got:
1/4*sqrt(2)*(log(3*sqrt(2) - 4) - log(sqrt(2)))
**********************************************************************
File "src/sage/symbolic/integration/external.py", line 88, in sage.symbolic.integration.external.fricas_integrator
Failed example:
fricas_integrator(1/(x^2+6), x, -oo, oo) # optional - fricas
Expected:
1/6*pi*sqrt(6)
Got:
1/6*sqrt(6)*pi
**********************************************************************
1 item had failures:
2 of 6 in sage.symbolic.integration.external.fricas_integrator
[14 tests, 2 failures, 2.28 s]
sage -t --long src/doc/en/thematic_tutorials/algebraic_combinatorics/rsk.rst
**********************************************************************
File "src/doc/en/thematic_tutorials/algebraic_combinatorics/rsk.rst", line 23, in doc.en.thematic_tutorials.algebraic_combinatorics.rsk
Failed example:
view(H) # optional - dot2tex
Expected nothing
Got:
An error occurred.
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012) (format=pdflatex 2014.3.17) 31 MAY 2015 15:44
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**\nonstopmode \input{sage.tex}
(./sage.tex (/usr/share/texmf-dist/tex/latex/base/article.cls
Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texmf-dist/tex/latex/base/size10.clo
File: size10.clo 2007/10/19 v1.4h Standard LaTeX file (size option)
)
\c@part=\count79
\c@section=\count80
\c@subsection=\count81
\c@subsubsection=\count82
\c@paragraph=\count83
\c@subparagraph=\count84
\c@figure=\count85
\c@table=\count86
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(/usr/share/texmf-dist/tex/latex/amsmath/amsmath.sty
Package: amsmath 2000/07/18 v2.13 AMS math features
\@mathmargin=\skip43
<BLANKLINE>
For additional information on amsmath, use the `?' option.
(/usr/share/texmf-dist/tex/latex/amsmath/amstext.sty
Package: amstext 2000/06/29 v2.01
<BLANKLINE>
(/usr/share/texmf-dist/tex/latex/amsmath/amsgen.sty
File: amsgen.sty 1999/11/30 v2.0
\@emptytoks=\toks14
\ex@=\dimen103
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Package: amsbsy 1999/11/29 v1.2d
\pmbraise@=\dimen104
)
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Package: amsopn 1999/12/14 v2.01 operator names
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LaTeX Info: Redefining \[ on input line 2666.
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Package: amssymb 2009/06/22 v3.00
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Package: amsfonts 2009/06/22 v3.00 Basic AMSFonts support
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Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR)
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Package: keyval 1999/03/16 v1.13 key=value parser (DPC)
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Package: graphics 2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR)
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Package: trig 1999/03/16 v1.09 sin cos tan (DPC)
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(/usr/share/texmf-dist/tex/latex/latexconfig/graphics.cfg
File: graphics.cfg 2010/04/23 v1.9 graphics configuration of TeX Live
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Package graphics Info: Driver file: pdftex.def on input line 91.
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File: pdftex.def 2011/05/27 v0.06d Graphics/color for pdfTeX
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Package: mathrsfs 1996/01/01 Math RSFS package v1.0 (jk)
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Package: inputenc 2008/03/30 v1.1d Input encoding file
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File: utf8.def 2008/04/05 v1.1m UTF-8 support for inputenc
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defining Unicode char U+00CB (decimal 203)
defining Unicode char U+00CC (decimal 204)
defining Unicode char U+00CD (decimal 205)
defining Unicode char U+00CE (decimal 206)
defining Unicode char U+00CF (decimal 207)
defining Unicode char U+00D0 (decimal 208)
defining Unicode char U+00D1 (decimal 209)
defining Unicode char U+00D2 (decimal 210)
defining Unicode char U+00D3 (decimal 211)
defining Unicode char U+00D4 (decimal 212)
defining Unicode char U+00D5 (decimal 213)
defining Unicode char U+00D6 (decimal 214)
defining Unicode char U+00D8 (decimal 216)
defining Unicode char U+00D9 (decimal 217)
defining Unicode char U+00DA (decimal 218)
defining Unicode char U+00DB (decimal 219)
defining Unicode char U+00DC (decimal 220)
defining Unicode char U+00DD (decimal 221)
defining Unicode char U+00DE (decimal 222)
defining Unicode char U+00DF (decimal 223)
defining Unicode char U+00E0 (decimal 224)
defining Unicode char U+00E1 (decimal 225)
defining Unicode char U+00E2 (decimal 226)
defining Unicode char U+00E3 (decimal 227)
defining Unicode char U+00E4 (decimal 228)
defining Unicode char U+00E5 (decimal 229)
defining Unicode char U+00E6 (decimal 230)
defining Unicode char U+00E7 (decimal 231)
defining Unicode char U+00E8 (decimal 232)
defining Unicode char U+00E9 (decimal 233)
defining Unicode char U+00EA (decimal 234)
defining Unicode char U+00EB (decimal 235)
defining Unicode char U+00EC (decimal 236)
defining Unicode char U+00ED (decimal 237)
defining Unicode char U+00EE (decimal 238)
defining Unicode char U+00EF (decimal 239)
defining Unicode char U+00F0 (decimal 240)
defining Unicode char U+00F1 (decimal 241)
defining Unicode char U+00F2 (decimal 242)
defining Unicode char U+00F3 (decimal 243)
defining Unicode char U+00F4 (decimal 244)
defining Unicode char U+00F5 (decimal 245)
defining Unicode char U+00F6 (decimal 246)
defining Unicode char U+00F8 (decimal 248)
defining Unicode char U+00F9 (decimal 249)
defining Unicode char U+00FA (decimal 250)
defining Unicode char U+00FB (decimal 251)
defining Unicode char U+00FC (decimal 252)
defining Unicode char U+00FD (decimal 253)
defining Unicode char U+00FE (decimal 254)
defining Unicode char U+00FF (decimal 255)
defining Unicode char U+0102 (decimal 258)
defining Unicode char U+0103 (decimal 259)
defining Unicode char U+0104 (decimal 260)
defining Unicode char U+0105 (decimal 261)
defining Unicode char U+0106 (decimal 262)
defining Unicode char U+0107 (decimal 263)
defining Unicode char U+010C (decimal 268)
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defining Unicode char U+010E (decimal 270)
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defining Unicode char U+0152 (decimal 338)
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defining Unicode char U+0154 (decimal 340)
defining Unicode char U+0155 (decimal 341)
defining Unicode char U+0158 (decimal 344)
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defining Unicode char U+0178 (decimal 376)
defining Unicode char U+0179 (decimal 377)
defining Unicode char U+017A (decimal 378)
defining Unicode char U+017B (decimal 379)
defining Unicode char U+017C (decimal 380)
defining Unicode char U+017D (decimal 381)
defining Unicode char U+017E (decimal 382)
defining Unicode char U+200C (decimal 8204)
defining Unicode char U+2013 (decimal 8211)
defining Unicode char U+2014 (decimal 8212)
defining Unicode char U+2018 (decimal 8216)
defining Unicode char U+2019 (decimal 8217)
defining Unicode char U+201A (decimal 8218)
defining Unicode char U+201C (decimal 8220)
defining Unicode char U+201D (decimal 8221)
defining Unicode char U+201E (decimal 8222)
defining Unicode char U+2030 (decimal 8240)
defining Unicode char U+2031 (decimal 8241)
defining Unicode char U+2039 (decimal 8249)
defining Unicode char U+203A (decimal 8250)
defining Unicode char U+2423 (decimal 9251)
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defining Unicode char U+00A1 (decimal 161)
defining Unicode char U+00A3 (decimal 163)
defining Unicode char U+00B8 (decimal 184)
defining Unicode char U+00BF (decimal 191)
defining Unicode char U+00C5 (decimal 197)
defining Unicode char U+00C6 (decimal 198)
defining Unicode char U+00D8 (decimal 216)
defining Unicode char U+00DF (decimal 223)
defining Unicode char U+00E6 (decimal 230)
defining Unicode char U+00EC (decimal 236)
defining Unicode char U+00ED (decimal 237)
defining Unicode char U+00EE (decimal 238)
defining Unicode char U+00EF (decimal 239)
defining Unicode char U+00F8 (decimal 248)
defining Unicode char U+0131 (decimal 305)
defining Unicode char U+0141 (decimal 321)
defining Unicode char U+0142 (decimal 322)
defining Unicode char U+0152 (decimal 338)
defining Unicode char U+0153 (decimal 339)
defining Unicode char U+2013 (decimal 8211)
defining Unicode char U+2014 (decimal 8212)
defining Unicode char U+2018 (decimal 8216)
defining Unicode char U+2019 (decimal 8217)
defining Unicode char U+201C (decimal 8220)
defining Unicode char U+201D (decimal 8221)
)
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**********************************************************************Well I'm happy to let you work on this ticket. But if nobody steps up to fix the failures: its better to fail and show an error (=this ticket) than to silently fail (without this ticket).
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago Well I'm happy to let you work on this ticket. But if nobody steps up to fix the failures: its better to fail and show an error (=this ticket) than to silently fail (without this ticket).
Amen to that.
Technically, this ticket does not break doctests. It just reports doctests which were already broken. And of course you can run sage -t --optional=sage as before (all doctests will pass), the same way that you can run sage -t --optional=<your_packages> in the latest beta to see all broken doctests.
I cannot fix all broken doctests of all optional packages in Sage, and I doubt that anybody can. If you set this ticket to needs_work until this is done you will just kill the ticket, and achieve nothing. If this ticket is merged, we will at last see the bugs that we missed until now, and fix them progressively. We cannot keep hiding bugs, and pretend that they do not exist just because we never run the optional doctests.
Nathann
7ed8c4ca-6d56-4ae9-953a-41e42b4ed313
commented
9 years ago Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:
1ffc3c1 | trac #18558: now with an 'installed' keyword |
7ed8c4ca-6d56-4ae9-953a-41e42b4ed313
commented
9 years ago 6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago (changed the keyword from installed_optional to installed. It now includes all installed packages. Even the standard ones, but that does not matter much.)
simon-king-jena
commented
9 years ago Replying to @jdemeyer:
Replying to @vbraun:
its not the job of this ticket to clear that up.
+1
No, but it's the job of every ticket to ensure that the ticket does not make doctests fail. I think it will be very confusing when we get lots of reports that
make ptestfails just somebody installed an optional package. At least, thosemaketargets should use--optional=sagethen.
-1, don't shoot the messenger. The ticket does not make doctests fail, but it makes them being executed.
Alternatively, mark failing tests as
# known bug.
That might be in the scope of this ticket.
On the other hand: Detecting failing tests (so that they can be marked) would require running make ptest on a Sage installation with all optional packages. Or perhaps even one Sage installation for each subset of optional packages, since I could imagine that optional package A makes tests fail that work fine if additionally optional package B is installed. That doesn't seem feasible.
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago Description changed:
---
+++
@@ -1,4 +1,4 @@
-With this branch, running "sage -t" will automatically involve testing all locally installed optional packages.
+With this branch, running "sage -t" will automatically involve testing all locally installed packages.
Of course, setting "--optional=X" only tests the packages listed in `X`.
Replying to @nathanncohen:
If you set this ticket to
needs_workuntil this is done you will just kill the ticket
...for good reasons. Merging this ticket as-is will massively decrease the usefulness of make ptest(long). That's what I'm worried about.
I believe very strongly that no ticket should be merged if it is known to make make ptestlong fail on systems where it used to pass. I am willing to shoot the messenger if needed, that's why # known bug exists.
I'm not setting this to needs_work because it seems I am alone with this opinion, but please think of the consequences of doing this.
jdemeyer
commented
9 years ago Replying to @simon-king-jena:
Detecting failing tests (so that they can be marked) would require running
make pteston a Sage installation with all optional packages.
That's not hard actually. See [comment:21]
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago ...for good reasons. Merging this ticket as-is will massively decrease the usefulness of
make ptest(long). That's what I'm worried about.
My hope is that it will only last momentarily. That whoever sees broken doctests will fix them, and that eventually we will fix those bugs instead of hiding them.
The only guys who run doctests (well, except bots) are developers. They are assumed to know that a beta release is "experimental" to some extent (big red warning on our website, and when you run sage).
Then there is the advertisement: we should probably wait for a beta0 release to merge this ticket (it can be reviewed before :-P), and when we do add a message (on sage-release, and why not in sage-banner) explaining a bit what happens. A "fix-optional-doctests" release, so that less persons have to wonder why doctests break all of a sudden. And help us fix them.
I'm not setting this to needs_work because it seems I am alone with this opinion, but please think of the consequences of doing this.
Well, it will be messy at first, I can't deny that. Then it will be less and less, until the problems are solved, and also we will not add more to the existing ones. Among the consequences, I also see that in the long run Sage will be tested better than it is today.
Nathann
jdemeyer
commented
9 years ago Intentionally releasing something with known failures is not a good strategy to have those failures fixed.
jdemeyer
commented
9 years ago Replying to @nathanncohen:
It now includes all installed packages.
Even worse. Now you just killed all experimental packages. I think there should be a place in Sage for things that are known to be broken but that people still care about.
Actually, a good compromise for this ticket might be: test only optional packages, move the known-broken packages (like 4ti2) to experimental.
If you want, you can create tickets for each of these broken packages and advertise them on sage-devel. If people care, they can fix the package and move it back to optional. If people don't care, there is nothing lost either.
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago Even worse. Now you just killed all experimental packages.
Hey, don't you think you are going a bit far? I "killed all experimental packages"? Seriously?
I think there should be a place in Sage for things that are known to be broken but that people still care about.
Experimental packages are advertised as broken [1]. Why would you expect them to pass tests? Addtionally, doctests can be removed if we need to. We can do that during the release cycle that will merge this branch.
Actually, a good compromise for this ticket might be: test only optional packages
This is what the first version of this branch did. This change was requested in [comment:17].
If you want, you can create tickets for each of these broken packages and advertise them on sage-devel.
I don't believe in opening tickets. I believe in written code. Advertising the bugs to the developers who use the package is what this branch does.
Nathann
[1] http://mirror.switch.ch/mirror/sagemath/spkg/experimental/
edd8e884-f507-429a-b577-5d554626c0fe
commented
9 years ago While this ticket is a good step towards a more tested system, i understand Jeroen's concerns that it might lead to a less tested one. I can witness that recurrent failing doctest lead to not caring anymore. For example, when i build a massive amount of binaries, i frequently randomly have broken unreproducible doctest for src/sage/interfaces/expect.py, the consequence is that i stopped to double check them, so if some real problem appears on this file, i will not see it because it will look like the random one. With a huge list of broken doctests, people won't check if some new bugs are reported within the list, and the effect of the ticket will be the opposite of it aim.
Replying to @jdemeyer:
Actually, a good compromise for this ticket might be: test only optional packages, move the known-broken packages (like
4ti2) to experimental.
+1, this is the difference between optional and experimental packages, and we keep the best of both points of views. I will add : "propose a way to test all installed (experimental) packages as well".
Replying to @nathanncohen:
Experimental packages are advertised as broken [1]. Why would you expect them to pass tests?
This will be a requirement to let them enter the optional list.
Advertising the bugs to whoever uses the packages is the whole point of this branch.
You claimed yourself that "The only guys who run doctests (well, except bots) are developers", hence if we want to advertize those bugs to users, this is not the appropriate way, we should write stopgaps instead.
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago Okay guys, let's do something. You either ask me something doable and reasonable or you kill this ticket. All you are achieving now is blocking an attempt to improve this software's quality. I will not fight for weeks here, and I will not spend my week-ends or night on it either. Either you start being constructive, or you keep arguing until everybody's energy is wasted. And it will not happen again, because there is only so much you can do when you know that all you will get when you are done implementing an improvement are endless complaints against change.
Nathann
jdemeyer
commented
9 years ago Replying to @nathanncohen:
Even worse. Now you just killed all experimental packages.
Hey, don't you think you are going a bit far? I "killed all experimental packages"?
I only used that wording because you said that I was killing your ticket.
Experimental packages are advertised as broken [1]. Why would you expect them to pass tests?
I don't expect them to pass tests. In fact, that was the whole point of my argument. They are known to fail tests, but so be it. Just don't force everybody to see those failures.
Addtionally, doctests can be removed if we need to.
They should not be removed, unless the doctest itself (not the code that it tests or the result) is somehow bad. That's what # known bug is for: to be able to keep the doctest but not see the failure in every make ptest run. My idea with experimental packages is that marking a package as "experimental" acts like adding # known bug to every optional doctest of that package.
jdemeyer
commented
9 years ago Replying to @nathanncohen:
Okay guys, let's do something. You either ask me something doable and reasonable or you kill this ticket. All you are achieving now is blocking an attempt to improve this software's quality. I will not fight for weeks here, and I will not spend my week-ends or night on it either. Either you start being constructive, or you keep arguing until everybody's energy is wasted.
I am trying to solve this in a constructive way. I proposed several alternative solutions (such as marking tests as # known bug or testing only optional packages) which would make this ticket acceptable for me and which are "doable and reasonable".
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago I don't expect them to pass tests. In fact, that was the whole point of my argument. They are known to fail tests, but so be it. Just don't force everybody to see those failures.
Everybody wil not. Only the developers who run the doctests and have the expermental package installed will see them. And that's precisely the guys who should fix it.
They should not be removed, unless the doctest itself (not the code that it tests or the result) is somehow bad. That's what
# known bugis for: to be able to keep the doctest but not see the failure in everymake ptestrun.
Fine. You are allowed to flag a doctest as "known bug" whenever you want. This branch does not change that.
My idea with experimental packages is that marking a package as "experimental" acts like adding
# known bugto every optional doctest of that package.
What is the point of doctests then? O_o (edit: see next comment->you cannot 'detect' experimental packages without internet access)
I am trying to solve this in a constructive way. I proposed several alternative solutions (such as marking tests as # known bug or testing only optional packages) which would make this ticket acceptable for me and which are "doable and reasonable".
Marking all tests as known bug is dangerous: we want to find the bugs, and we want to fix them. Testing optional packages only is what this branch did at first, until I was asked to make it otherwise. Agree with yourselves, and I will update the ticket, but I don't want to keep changing branches forever.
Addtionally, I cannot by myself go over all optional/experimental packages and make changes to all of them. You can't ask me that, this is not reasonable. That's why I mentionned merged this branch in a beta0, so that everybody can participate to the effort until the next release. This, on the other hand, is a good outcome, and will ensure that the job is done properly.
Nathann
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago Another precision: one advantage of 'installed' over 'installed_optional' and 'installed_experimental' is that it is currently impossible to get (without internet access) the list of all optional/experimental packages.
What can be listed 'locally':
Thus, I can only write a branch which test all new-style optional packages (there are no experimental new-style packages). If an old-style spkg is installed, I have no way to 'detect' its category.
It can be either 'installed' or 'new-style optional'.
Nathann
jdemeyer
commented
9 years ago Changed dependencies from #18456, #18124 to #18456, #18124, #18559
jdemeyer
commented
9 years ago Replying to @nathanncohen:
I don't expect them to pass tests. In fact, that was the whole point of my argument. They are known to fail tests, but so be it. Just don't force everybody to see those failures.
Everybody wil not. Only the developers who run the doctests and have the expermental package installed will see them. And that's precisely the guys who should fix it.
Nobody should fix anything. The fact that I am a Sage developer who happens to have some experimental package installed does not mean that I should fix it.
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago Nobody should fix anything. The fact that I am a Sage developer who happens to have some experimental package installed does not mean that I should fix it.
Agreed. In fact you have many options: 1) not care 2) remove the doctest 3) flag it as 'known bug'
jdemeyer
commented
9 years ago Replying to @nathanncohen:
It can be either 'installed' or 'new-style optional'.
OK, then I prefer 'new-style optional' like in the first version of this ticket.
Addtionally, I cannot by myself go over all optional/experimental packages and make changes to all of them. You can't ask me that, this is not reasonable.
I'm willing to do that (for optional packages), if you agree that it's a good idea to do that.
jdemeyer
commented
9 years ago Replying to @nathanncohen:
Nobody should fix anything. The fact that I am a Sage developer who happens to have some experimental package installed does not mean that I should fix it.
Agreed. In fact you have many options: 1) not care 2) remove the doctest 3) flag it as 'known bug'
No, this ticket removes option 1) in practice.
6bdad4c1-1e26-4f2f-a442-a01a2292c181
commented
9 years ago OK, then I prefer 'new-style optional' like in the first version of this ticket.
Okay, I will re-update the commit shortly.
I'm willing to do that (for optional packages), if you agree that it's a good idea to do that.
What is it exactly that you want to do?
Nathann
With this branch, running "sage -t" will automatically involve testing all installed up-to-date new-style optional Sage packages.
Depends on #18456 Depends on #18124 Depends on #18559 Depends on #18563 Depends on #18579 Depends on #18581
CC: @vbraun @jdemeyer @sagetrac-tmonteil @seblabbe
Component: doctest framework
Author: Nathann Cohen, Jeroen Demeyer
Branch/Commit:
82f3eecReviewer: Jeroen Demeyer, Karl-Dieter Crisman, John Palmieri
Issue created by migration from https://trac.sagemath.org/ticket/18558