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sagnikbanerjee15 / Finder

A fully automated gene annotator from RNA-Seq expression data
MIT License
57 stars 14 forks source link

Unable to load modules #40

Closed skyungyong closed 2 years ago

skyungyong commented 2 years ago

Hi!

I am having issues with loading modules. Am I missing something in installation?

conda activate finder_conda_env
export PATH=$PATH:/global/scratch/users/skyungyong/Software/finder

whereis finder finder: /global/scratch/users/skyungyong/Software/finder/finder which finder /global/scratch/users/skyungyong/Software/finder/finder tail -n 1 ~/.bashrc export PATH=$PATH:/global/scratch/users/skyungyong/Software/finder

finder -h Traceback (most recent call last): File "/global/scratch/users/skyungyong/Software/finder/finder", line 54, in from scripts.alignReads import * ModuleNotFoundError: No module named 'scripts.alignReads'

skyungyong commented 2 years ago

Seems to be working after adding __init__.py in the scripts folder :)

sagnikbanerjee15 commented 2 years ago

Hello @skyungyong,

Thank you so much for your interest in finder. Please give me about a week. I am currently working on releasing a docker. But it will be a bit different that the original pipeline since some of the dependent software are not redistributable.

Thank you.