Open KristinaGagalova opened 5 years ago
Hi Kristina,
Those checks could indeed add a lot of value. That would entail adding a new protein mode to the tool using GeneWise or Augustus, and possibly a function to predict proteins from input transcripts. This would be non-trivial, but I'll add it to the features wish list!
Cheers
Thanks for the reply! I hope everything is going well
Hi Austin,
GMAP is an aligner that do not account for gene functionality (completeness, absence if STOP codons, frame-shift etc.). Just aligning the transcript sequence does not tell anything about those features.
Will be there possible to use a software that accounts for those properties? GeneWise is a software that aligns protein sequences against the DNA. Another option is Augustus.
That will be a great improvement for the tool Cheers