Closed nm15336 closed 1 year ago
In general when working with containers, you will need to mount your data into the container
apptainer exec --bind /path/to/plinkfile:/mnt .......
Then your plink files will all be located in the /mnt directory within your container
I suggest reading through the apptainer docs
Thank you!
Hi, I am running step 1 of saige using plink genetic files. However I am getting the error:
The data do exist, is in the right dir, and I have tried renaming the files, changing their location, adding and removing "", but get the same error.
Is this because I am calling it through a singularity module? Is there a reason it would not recognise the files?
Or do you know what else could be causing this? Full .out file attached. Thanks! saige-error-git.txt