I would like to run step 2 in subset genomic regions so as to speed up the run times for association testing. I see that there is a rangestoIncludeFileflag which would allow me to specify regions from a vcf file, and do just this.
Are there any disadvantages to using such a subsetting approach for running association analysis?
Hello,
I would like to run step 2 in subset genomic regions so as to speed up the run times for association testing. I see that there is a
rangestoIncludeFileflag which would allow me to specify regions from a vcf file, and do just this.Are there any disadvantages to using such a subsetting approach for running association analysis?
Thank you for your help! Anna