Closed JonChan0 closed 12 months ago
Issue resolved with using different input files into step1.
Hi @JonChan0 - would you mind describing what you changed in your input files to resolve this error? I'm running into the same issue. Thank you!
Hii @embertucci, I changed all input files:
@JonChan0 thank you for your quick response - much appreciated!
Hi,
I am using SAIGE R package on a cluster node (>100 GB of RAM free) to try run step1: fitting the null GLMM using the following R script - saige_step1_submission.txt
However, this results in the following issue:
This has been replicated across both UK Biobank's Research Access Platform using the Docker image: wzhou88/saige:1.2.0 as well as on UK Biobank's Research Access Platform's RStudio Workbench following install from source code, as well as on the aforementioned environment of local install (Conda) on another cluster node environment.
Full log attached below rescomp_saige_gene_errorlog.txt