Closed Lloyd-LiuSiyi closed 10 months ago
Plus on a different Ubuntu 20.04 terminal I somehow passed Step 3 magically and encountered the following error in Step 4:
R CMD INSTALL SAIGE
* installing to library ‘/home/lloyd/R/x86_64-pc-linux-gnu-library/4.3’
* installing *source* package ‘SAIGE’ ...
** using staged installation
cget must be installed to build SAIGE. Run Requirement already satisfied: cget in /home/lloyd/.local/lib/python3.8/site-packages (0.2.0)
Requirement already satisfied: six>=1.10 in /usr/lib/python3/dist-packages (from cget) (1.14.0)
Requirement already satisfied: click>=6.6 in /usr/lib/python3/dist-packages (from cget) (7.0).
ERROR: configuration failed for package ‘SAIGE’
* removing ‘/home/lloyd/R/x86_64-pc-linux-gnu-library/4.3/SAIGE’
Seems I have satisfied all dependencies and requirements but the configuration still fails. Does anybody know how to fix it?
Hi, I was installing SAIGE from the source code and encountered these error messages during step 3
Rscript ./SAIGE/extdata/install_packages.R
However, I have successfully installed
MetaSKAT
andRcpp
in R.and
My system is Ubuntu 20.04.3 LTS in Windows subsystem for Linux (wsl). What could the problem be? Many thanks!