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saigegit / SAIGE

Development for SAIGE and SAIGE-GENE(+)
GNU General Public License v3.0
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SAIGE not installing on R 4.3.2 #127

Open donnybeelo opened 9 months ago

donnybeelo commented 9 months ago

I've upgraded the R version from 4.2.3 to 4.3.2, and all of a sudden it doesn't install. I'm installing SAIGE using ansible, but it doesn't give me any errors, but when i check after it's done, SAIGE is nowhere to be seen. I'm trying to find R 4.2.3 but it doesn't seem to be available anymore, at least for Debian 10?

kscott-1 commented 9 months ago

@donnybeelo I can't speak for your particular issue, but SAIGE builds with no issues on the debian trixie (13) development branch, running R 4.3.2_1 by default.

R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux trixie/sid

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.11.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.11.0

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C

time zone: Etc/UTC
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] SAIGE_1.3.1

loaded via a namespace (and not attached):
[1] compiler_4.3.2     Matrix_1.6-3       Rcpp_1.0.11        grid_4.3.2
[5] data.table_1.14.8  RcppParallel_5.1.7 lattice_0.22-5