Open mohasal12 opened 10 months ago
I am getting the following error
Error: vector::_M_range_check: __n (which is 2538) >= this->size() (which is 2538) Execution halted
when we reach the chunck number 41, without conditioning the code works fine.
My code
/usr/bin/time -v Rscript ${saigepath}step2_SPAtests.R \ --vcfFile=${vcfpath}CHR6_PID112437_colon.vcf.gz \ --vcfFileIndex=${vcfpath}CHR6_PID112437_colon.vcf.gz.csi \ --vcfField=DS \ --LOCO=FALSE \ --chrom=6 \ --minMAF=0 \ --minMAC=3 \ --is_fastTest=TRUE \ --GMMATmodelFile=${outpath}out_s1_0.125_2000.rda \ --varianceRatioFile=${outpath}out_s1_0.125_2000.varianceRatio.txt \ --SAIGEOutputFile=${outpath}out_6:32651477:A:T.txt \ --is_output_moreDetails=TRUE \ --sparseGRMFile=${outpath}sparseGRM_relatednessCutoff_0.125_2000_randomMarkersUsed.sparseGRM.mtx \ --sparseGRMSampleIDFile=${outpath}sparseGRM_relatednessCutoff_0.125_2000_randomMarkersUsed.sparseGRM.mtx.sampleIDs.txt \ --relatednessCutoff=0.125 \ --condition=6:32651477:A:T
Could you provide any feedback on this issue.
I am getting the following error
when we reach the chunck number 41, without conditioning the code works fine.
My code
Could you provide any feedback on this issue.