Add RareEffect functions - Githubissues

saigegit / SAIGE

Development for SAIGE and SAIGE-GENE(+)

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Add RareEffect functions #144

Closed namks closed 3 months ago

namks commented 3 months ago

Added and modified some files for RareEffect functions

Added

R/RareEffect.R : R functions related to RareEffect
R/Firth.R : R functions related to the fast implementation of Firth bias correction
extdata/run_RareEffect.R : File to run RareEffect main function
extdata/calculate_RareEffect_PRS.R : File to calculated RareEffect PRS from the variant-level effect size file

Modified

extdata/install_packages.R : In line 10, added required packages: "tibble", "sparsesvd", "stringr"