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saigegit / SAIGE

Development for SAIGE and SAIGE-GENE(+)
GNU General Public License v3.0
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SAIGE from source code. No MetaSKAT. #3

Closed FrederikFilip closed 2 years ago

FrederikFilip commented 2 years ago

More a FYI than an actual issue.

When trying to install SAIGE from source code, I first ran the installation of dependencies

Rscript ./SAIGE/extdata/install_packages.R

but the package 'MetaSKAT' was not installed, so I had to download it and install it like this:

wget https://cran.r-project.org/src/contrib/Archive/MetaSKAT/MetaSKAT_0.81.tar.gz
tar -xvf MetaSKAT_0.81.tar.gz
rm MetaSKAT_0.81.tar.gz
R CMD INSTALL MetaSKAT

After this everything compiled, and I was able to run the provided examples.

saigegit commented 2 years ago

devtools::install_github("leeshawn/MetaSKAT")

is now added to the ./SAIGE/extdata/install_packages.R