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saigegit / SAIGE

Development for SAIGE and SAIGE-GENE(+)
GNU General Public License v3.0
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SAIGE installation error #74

Closed kousikbioinfo closed 1 year ago

kousikbioinfo commented 1 year ago

I am trying to install SAIGE through conda by following this, but getting error R CMD INSTALL.

(RSAIGE) [Kousik@AZ-scp - Software] $ R CMD INSTALL SAIGE
* installing to library ‘/projects/cgr/users/klds407/.conda_env/RSAIGE/lib/R/library’
* installing *source* package ‘SAIGE’ ...
** using staged installation
Ignore package xz
Downloading https://github.com/statgen/savvy/archive/v2.1.0.tar.gz
Download failed with error 501 for: //github.com/statgen/savvy/archive/v2.1.0.tar.gz
Failed to build package statgen/savvy
ERROR: configuration failed for package ‘SAIGE’
* removing ‘/projects/cgr/users/klds407/.conda_env/RSAIGE/lib/R/library/SAIGE’
(RSAIGE) [Kousik@AZ-scp - Software] $ cd /projects/cgr/users/klds407/.conda_env/RSAIGE

I'm not sure how to fix it from here. Could anybody help?

weizhou0 commented 1 year ago

Hi @kousikbioinfo,

It looks like there was a connection problem to download the savvy library. Now the URL link https://github.com/statgen/savvy/archive/v2.1.0.tar.gz works. Can you please try again?

Thanks, Wei