Error: "Please use kallisto 0.43.1 and samtools 1.4 or later"; both versions are newer

[bktorrevillas]

Hello, I am setting up FVE to run for the first time. Thank you for creating this program, I am excited about its utility! On my first attempt to run the test data set, I got this error:

(base) : $ java -cp bin FastViromeExplorer -1 ~/FastViromeExplorer/test/reads_1.fq -2 ~/FastViromeExplorer/test/reads_2.fq -i ~/FastViromeExplorer/test/GOV-viral-populations/GOV_viral_populations.idx -l ~/FastViromeExplorer/test/GOV-viral-populations/gov_viral_populations-length.txt -o test-output

Finished parsing inputs. Error: The sam file FastViromeExplorer-reads-mapped-sorted.sam is empty. Please check the kallisto and samtools version. Please use kallisto 0.43.1 and samtools 1.4 or later.

## I checked the versions of both, I'm wondering if the reason I'm getting this error is because I installed Kallisto and Samtools with miniconda? Thanks for your advice.

(base) :~/FastViromeExplorer$ kallisto -version Error: invalid command -version kallisto 0.46.2

Usage: kallisto [arguments] ..

Where can be one of:

index         Builds a kallisto index 
quant         Runs the quantification algorithm 
bus           Generate BUS files for single-cell data 
pseudo        Runs the pseudoalignment step 
merge         Merges several batch runs 
h5dump        Converts HDF5-formatted results to plaintext
inspect       Inspects and gives information about an index
version       Prints version information
cite          Prints citation information

Running kallisto without arguments prints usage information for

(base) :~/FastViromeExplorer$ samtools -version [main] unrecognized command '-version' (base) :~/FastViromeExplorer$ samtools --version samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. (base) :~/FastViromeExplorer$ which samtools /home/usr/miniconda3/bin/samtools (base) :~/FastViromeExplorer$ which kallisto /home/usr/miniconda3/bin/kallisto (base) :~/FastViromeExplorer$

[778055611]

I met the same question too,do you solve this problem?and I want to know how to fix it .thnk you.