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saimoom / phyml

Automatically exported from code.google.com/p/phyml
GNU General Public License v2.0
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Update all transition matrices in one go #9

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Currently transition matrices are being updated individually to resemble the 
original PhyML code. In other words, UpdateTransitionMatrices() updates a 
single matrix. Consider surgically extracting this to the "outer stack" so that 
all matrices are updated in one go (this also prevents many unnecessary calls 
to update the rate-across-sites and eigen-decompositions)

Original issue reported on code.google.com by imran.fa...@gmail.com on 18 Sep 2013 at 3:30

GoogleCodeExporter commented 9 years ago

Original comment by imran.fa...@gmail.com on 18 Sep 2013 at 3:36