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sairum / tcsBU

a TCS network beautifier
MIT License
7 stars 4 forks source link

Scaling of circles #4

Closed EriFa closed 6 years ago

EriFa commented 6 years ago

Hi! Awesome program. I am curious though - the circles representing the haplotypes seem to scale by the diameter of the circle, rather than the area of the circle like how most people are used to seeing haplotype networks. This means that a haplotype with double the frequency is a circle with twice the diameter, but this makes the circle more than twice as large in area, Is there any way of making the circle area, rather than the circle diameter proportional to the frequency of the haplotype? Many thanks!

sairum commented 6 years ago

Hi You are right! I really don't know how this never crossed my mind! I already corrected the code in my 'local' repository to compute a radius (d3 needs a radius) of an area which is proportional to the number of haplotypes. However, since I've done other minor changes related with the data download buttons (which are still not working, eventually related with a change in browser security policies) I'll have to check again how git works just to submit this particular modification! This may take a while since I don't use git/github that much. Best regards Antonio

EriFa commented 6 years ago

Oh yay! Thank you so much Antonio, for fixing it so fast! Looks great and works wonderfully, can't wait to use it on my data. You've saved my PhD - it's so hard finding a program that will make nice looking haplotype networks!