extra information on the regions

saketkc / gencode_regions

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

BSD 2-Clause "Simplified" License

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extra information on the regions #1

Closed asifzubair closed 7 years ago

asifzubair commented 7 years ago

The script looks great.

However, is it possible to get some extra information on the genomic features than just the coordinates ? For example, for the exons, would it be possible to know

which gene a particular exon belongs to
its position in the exon set - first, second ... last etc.

Thanks!

saketkc commented 7 years ago

Fixed in https://github.com/saketkc/gencode_regions/commit/323ce04013180ed80fcbe425a3f8b3cf4cd2d4ed

asifzubair commented 7 years ago

sorry but i didn't get this line. You seem to have the same statement in both the if and else block.

saketkc commented 7 years ago

Will fix it, but that doesn't affect any other steps.

saketkc commented 7 years ago

Improved in https://github.com/saketkc/gencode_regions/commit/ca4ceb30966368de7ce3205b9709a24545976709