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saketkc / gencode_regions

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
BSD 2-Clause "Simplified" License
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the position of first intron #10

Open sixone11 opened 3 years ago

sixone11 commented 3 years ago

I am a little bit confused about the first intron, just using the first one in the introns.bed of each gene or we should also use the *.genepred file and consider more things about it.

Thank you so much, your code is pretty valuable. I am looking forward to your reply.

saketkc commented 3 years ago

Hi @sixone11, the introns.bed will contain all the introns. We are revamping this repositry to make it easier to get the first intron, last intron etc. I hope that helps!