Closed eul2021 closed 2 years ago
Thanks for the suggestion. I think we should be able to support it.
With the latest changes on master, you should be able to print the study_title
:
pysradb metadata --detailed DRR062876
run_accession study_accession study_title experiment_accession experiment_title experiment_desc organism_taxid organism_name library_name library_strategy library_source library_selection library_layout sample_accession sample_title instrument instrument_model instrument_model_desc total_spots total_size run_total_spots run_total_bases run_alias sra_url experiment_alias Ontology ID cell_type company rna_catalog ena_fastq_http ena_fastq_http_1 ena_fastq_http_2 ena_fastq_ftp ena_fastq_ftp_1 ena_fastq_ftp_2
DRR062876 DRP001150 A promoter level mammalian expression atlas (human, RNA-Seq) DRX057117 10199-103F1_RDhi10060 10199-103F1_RDhi10060 9606 Homo sapiens RDhi10060 RNA-Seq TRANSCRIPTOMIC unspecified SINGLE DRS008595 <NA> Illumina HiSeq 2000 Illumina HiSeq 2000 ILLUMINA 169510397 12224066915 169510397 17120550097 DRR062876 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/DRR062876/DRR062876.1 DRX057117 FF:10199-103F1 CELL MIXTURE - tissue sample Biochain R1234190-50 <NA> <NA> <NA> <NA> <NA> <NA>
Thank you very much, Saket.
Description
Hello, I was wondering if I can use pysradb to get "study" info for SRR id. Here is an example : for run accession DRR062876, I do see "Study: A promoter level mammalian expression atlas (human, RNA-seq)" in the NCBI search(https://www.ncbi.nlm.nih.gov/sra/?term=DRR062876), but it's not in the --detailed metadata output for this sample.
df = db.sra_metadata('DRR062876')
Thank you.