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saketkc / pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO
https://saketkc.github.io/pysradb
BSD 3-Clause "New" or "Revised" License
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[BUG] #153

Closed cyto-matan closed 2 years ago

cyto-matan commented 2 years ago

Describe the bug gsm-to-srp is not working

To Reproduce pysradb gsm-to-srp GSM2177186

Desktop (please complete the following information): NAME="Ubuntu" VERSION="18.04.5 LTS (Bionic Beaver)" ID=ubuntu ID_LIKE=debian PRETTY_NAME="Ubuntu 18.04.5 LTS" VERSION_ID="18.04" pysradb 1.3.0

saketkc commented 2 years ago

Can you try this with the main branch? I do not see any error (could have be an intermittent issue at NCBI end):

$ pysradb gsm-to-srp GSM2177186
experiment_alias        study_accession
GSE81903 SRP075720