Closed Maarten-vd-Sande closed 2 years ago
Describe the bug
I feel like I never get ena fastq urls anymore? DRR138997 should be downloadable from ftp://ftp.sra.ebi.ac.uk/vol1/fastq/DRR138/DRR138997/DRR138997_1.fastq.gz, but pysradb doesn't find it
import pysradb web = pysradb.SRAweb() web.sra_metadata(["DRR138997"], detailed=True) run_accession study_accession study_title experiment_accession ... ena_fastq_http_2 ena_fastq_ftp ena_fastq_ftp_1 ena_fastq_ftp_2 0 DRR138976 DRP004498 Accessible chromatin landscapes of vertebrate ... DRX131714 ... <NA> <NA> <NA> <NA> 1 DRR138997 DRP004498 Accessible chromatin landscapes of vertebrate ... DRX131714 ... <NA> <NA> <NA> <NA>
Thanks - this was due to an upstream change in the ENA search url. 1.4.2 should fix it.
Awesome, thanks!
Describe the bug
I feel like I never get ena fastq urls anymore? DRR138997 should be downloadable from ftp://ftp.sra.ebi.ac.uk/vol1/fastq/DRR138/DRR138997/DRR138997_1.fastq.gz, but pysradb doesn't find it