Traceback (most recent call last):
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/urllib3/connection.py", line 159, in _new_conn
conn = connection.create_connection(
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/urllib3/util/connection.py", line 61, in create_connection
for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/socket.py", line 918, in getaddrinfo
for res in _socket.getaddrinfo(host, port, family, type, proto, flags):
socket.gaierror: [Errno -2] Name or service not known
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/urllib3/connectionpool.py", line 670, in urlopen
httplib_response = self._make_request(
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/urllib3/connectionpool.py", line 381, in _make_request
self._validate_conn(conn)
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/urllib3/connectionpool.py", line 978, in _validate_conn
conn.connect()
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/urllib3/connection.py", line 309, in connect
conn = self._new_conn()
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/urllib3/connection.py", line 171, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f7e6cf81490>: Failed to establish a new connection: [Errno -2] Name or service not known
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/data/home/tiravut.per/.local/lib/python3.8/site-packages/requests/adapters.py", line 440, in send
resp = conn.urlopen(
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/urllib3/connectionpool.py", line 726, in urlopen
retries = retries.increment(
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/urllib3/util/retry.py", line 446, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='eutils.ncbi.nlm.nih.gov', port=443): Max retries exceeded with url: /entrez/eutils/efetch.fcgi?db=sra&usehistory=n&retmode=runinfo&query_key=1&WebEnv=MCID_63aaa3dd8528da49417c64ca&retstart=4500&retmax=500 (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f7e6cf81490>: Failed to establish a new connection: [Errno -2] Name or service not known'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/data/apps/modules/software/Anaconda3/2020.11/bin/pysradb", line 8, in <module>
sys.exit(parse_args())
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/pysradb/cli.py", line 1202, in parse_args
metadata(
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/pysradb/cli.py", line 79, in metadata
df = sradb.sra_metadata(
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/pysradb/sraweb.py", line 548, in sra_metadata
efetch_result = self.get_efetch_response("sra", srp)
File "/data/apps/modules/software/Anaconda3/2020.11/lib/python3.8/site-packages/pysradb/sraweb.py", line 349, in get_efetch_response
request = requests.get(self.base_url["efetch"], params=OrderedDict(payload))
File "/data/home/tiravut.per/.local/lib/python3.8/site-packages/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/data/home/tiravut.per/.local/lib/python3.8/site-packages/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/data/home/tiravut.per/.local/lib/python3.8/site-packages/requests/sessions.py", line 529, in request
resp = self.send(prep, **send_kwargs)
File "/data/home/tiravut.per/.local/lib/python3.8/site-packages/requests/sessions.py", line 645, in send
r = adapter.send(request, **kwargs)
File "/data/home/tiravut.per/.local/lib/python3.8/site-packages/requests/adapters.py", line 519, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='eutils.ncbi.nlm.nih.gov', port=443): Max retries exceeded with url: /entrez/eutils/efetch.fcgi?db=sra&usehistory=n&retmode=runinfo&query_key=1&WebEnv=MCID_63aaa3dd8528da49417c64ca&retstart=4500&retmax=500 (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f7e6cf81490>: Failed to establish a new connection: [Errno -2] Name or service not known'))
Thank you.
Desktop (please complete the following information):
When I search
and it gives this error
Thank you.
Desktop (please complete the following information):