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saketkc / pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO
https://saketkc.github.io/pysradb
BSD 3-Clause "New" or "Revised" License
303 stars 49 forks source link

Unable to parse xml response. Received: OrderedDict([('EXPERIMENT_PACKAGE_SET', OrderedDict([('Error', 'Internal Server Error (db)')]))]) #173

Closed nayanvs closed 1 year ago

nayanvs commented 1 year ago

conda activate pysradb pysradb download -p PRJNA634994 Error: Unable to parse xml response. Received: OrderedDict([('EXPERIMENT_PACKAGE_SET', OrderedDict([('Error', 'Internal Server Error (db)')]))])

It worked once but then started giving errors the second time.

Maarten-vd-Sande commented 1 year ago

I got the same error just now as well. I guess that's a problem on the EBI ENA side? As it says internal server error?

saketkc commented 1 year ago

Thanks for reporting the bug. I think there were some changes at the xml response from NCBI. I am looking into it.

Maarten-vd-Sande commented 1 year ago

Seems to be resolved for me 😄

nayanvs commented 1 year ago

Automatically resolved. @saketkc @Maarten-vd-Sande Thanks a lot for your attention.