[ENH] Pysradb doesn't work on "superseries"

saketkc / pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

https://saketkc.github.io/pysradb

BSD 3-Clause "New" or "Revised" License

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[ENH] Pysradb doesn't work on "superseries" #180

Open gdolsten opened 1 year ago

gdolsten commented 1 year ago

If I run "pysradb gsm-to-srp GSE163666", I get no results. But if I run on one of the subseries, GSE165894, it works perfectly. Is there anyway to "traverse" the GEO graph to make sure I am getting all of the subseries/superseries? I am trying to download some data but for some of the GSE IDs I only have one out of several subseries, and I would love to go from that subseries to the superseries to make sure I download all of the data.

saketkc commented 1 year ago

Thanks for brining this to my attention. At the moment I am unsure why it misses it, but I am going to flag this as a bug.