saketkc / pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO
https://saketkc.github.io/pysradb
BSD 3-Clause "New" or "Revised" License
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[BUG] varying number of columns in output #185

Open bernt-matthias opened 1 year ago

bernt-matthias commented 1 year ago

Describe the bug

For this request

pysradb search --db sra --query 'NextSeq 500 stress' --source 'transcriptomic' --organism 'Arabidopsis thaliana' --platform 'illumina' --selection 'random' --strategy 'rna seq'  --max 20 --verbosity 3 --stats --saveto 'output.tsv'

I get outputs with different numbers of columns: something between 125 and 129.

Is this expected?

To Reproduce

See above

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Additional context