[BUG] Parsing error in gse-to-srp

saketkc / pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

https://saketkc.github.io/pysradb

BSD 3-Clause "New" or "Revised" License

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Closed njspix closed 1 year ago

njspix commented 1 year ago

Describe the bug Unusual output/parsing error in gse-to-srp

To Reproduce Steps to reproduce the behavior:

$pysradb gse-to-srp GSE89545
study_alias study_accession
GSE148988 SRP257577
GSE89545 SRP093251

Desktop (please complete the following information):

This only appears to happen with this particular GSE id; the second returned SRP is correct but I'm not sure why the first one shows up at all.

saketkc commented 1 year ago

Thanks for the report. This should now be fixed in the develop branch.