Open marcomoretto opened 10 months ago
Thanks for catching this and apoligies for the delayed response. I think there is a bug in the download module. For now I would recommend saving the metadata in a csv using pysradb metadata --detailed <SRP> --saveto x.tsv
and using a tool like curl/wget to download files from the *_url
column
Describe the bug Running pysradb from command line to download a single experiment SRX results into the program hanging forever.
To Reproduce Steps to reproduce the behavior:
pip install git+https://github.com/saketkc/pysradb
pysradb download -y -t 8 --out-dir ./pysradb_downloads -x SRX1254413
Additional context I used Google colab to reproduce the bug with the latest version of pysradb available in GitHub