01.SRAdb-demo.ipynb's output is different from yours.

saketkc / pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

https://saketkc.github.io/pysradb

BSD 3-Clause "New" or "Revised" License

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01.SRAdb-demo.ipynb's output is different from yours. #21

Closed knagakura closed 4 years ago

knagakura commented 4 years ago

pysradb version:0.10.2
Python version:3.6.5
Operating System: macOS Mojave 10.14.5

Description

I want to reproduct your .ipynb file, pysradb/notebooks/01.SRAdb-demo. And I run that file in my local environment. But the output is different.

I cannot understand this problem. If you know have some solution or idea, please tell me.

Thank you for your attension.

What I Did

df = db.sra_metadata('SRP017942')
df

Screen Shot 2020-02-14 at 14 51 15

saketkc commented 4 years ago

Hello @knagakura, thanks for your bug report. The notebooks were outdated. I have now updated them to reflect the new web-based API. The SRAmetadb.sqlite based API will be retired very soon as it seems to be missing certain datasets randomly.

You will find the updated notebooks here: https://github.com/saketkc/pysradb/tree/master/notebooks

Please let me know if you have any other questions. Thanks!

knagakura commented 4 years ago

Thank you!!!! I can get the same information!