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saketkc / pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO
https://saketkc.github.io/pysradb
BSD 3-Clause "New" or "Revised" License
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Empty results error while searching #49

Closed sebboegel closed 4 years ago

sebboegel commented 4 years ago

Mac OS Cataline 10.15.5 python 2.7 pysradb 0.7.0

SRAmetadb.sqlite downloaded and extracted

Sebastians-Air:pysradb sebastian$ pysradb search '"single-cell rna-seq" retina' /Users/sebastian/Library/Python/2.7/lib/python/site-packages/pysradb/basedb.py:108: RuntimeWarning: Found no matching results for query. warnings.warn("Found no matching results for query.", RuntimeWarning) /Users/sebastian/Library/Python/2.7/lib/python/site-packages/pysradb/sradb.py:243: UserWarning: Empty results warnings.warn("Empty results", UserWarning)

saketkc commented 4 years ago

We are moving away from the SRAmetadb.sqlite approach. If you are interested please feel free to try https://github.com/saketkc/pysradb/pull/43. An example notebook is here: https://colab.research.google.com/drive/1Rq0tpT3UwtpZywIgicWaFgnonprKMg93?usp=sharing

Sorry about the inconvenience.