Adding S4 methods to run spatialDE on matrix and SpatialExperiment objects as input.
The spatialDE() function basically runs stabilize(), regress_out() and run() in order on the input count matrix. When a SpatialExperiment object is used as input, coordinates are taken from spatialCoords().
Adding S4 methods to run
spatialDEonmatrixandSpatialExperimentobjects as input.The
spatialDE()function basically runsstabilize(),regress_out()andrun()in order on the input count matrix. When aSpatialExperimentobject is used as input, coordinates are taken fromspatialCoords().