I have instaled spatialDE, but it run with error "Error in system2(python.cmd, c("-E", "-c", shQuote("print(1)")), stdout = TRUE, : error in running command"

sales-lab / spatialDE

R wrapper for SpatialDE

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I have instaled spatialDE, but it run with error "Error in system2(python.cmd, c("-E", "-c", shQuote("print(1)")), stdout = TRUE, : error in running command" #23

Closed forrwill closed 9 months ago

forrwill commented 2 years ago

py_available py_available py_available() [1] TRUE spatialDE_res <- spatialDE(counts, coordinates = x,verbose = FALSE) Error in system2(python.cmd, c("-E", "-c", shQuote("print(1)")), stdout = TRUE, : error in running command python.cmd Error: object 'python.cmd' not found

davidecrs commented 2 years ago

Hi @forrwill,

can you please give me more details about your error? For example, did you install the package through Bioconductor or Github? Can you print your sessionInfo()?

Best regards

gbrsales commented 9 months ago

No information available to reproduce.