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The Integrative Modeling Platform
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multifit doc warnings #358

Closed drussel closed 11 years ago

drussel commented 11 years ago 
/Users/drussel/src/imp/debug/include/IMP/multifit/fft_based_rigid_fitting.h:156: Warning: argument 'max_clustering_angle' of command @param is not found in the argument list of IMP::multifit::FFTFitting::do_local_fitting(em::DensityMap *dmap, double density_threshold, atom::Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation, const std::string &angles_filename="")
/Users/drussel/src/imp/debug/include/IMP/multifit/fft_based_rigid_fitting.h:156: Warning: The following parameters of IMP::multifit::FFTFitting::do_local_fitting(em::DensityMap *dmap, double density_threshold, atom::Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation, const std::string &angles_filename="") are not documented:
  parameter 'max_angle_sampling_rad'
  parameter 'num_fits_to_report'
  parameter 'max_clustering_rotation'
drussel commented 11 years ago 
/Users/drussel/src/imp/debug/include/IMP/multifit/anchor_graph.h:41: Warning: argument 'comp_ind' of command @param is not found in the argument list of IMP::multifit::ProbabilisticAnchorGraph::set_particle_probabilities_on_anchors(Particle *p, multifit::FittingSolutionRecords sols)
/Users/drussel/src/imp/debug/include/IMP/multifit/anchor_graph.h:41: Warning: argument 'comp_cen' of command @param is not found in the argument list of IMP::multifit::ProbabilisticAnchorGraph::set_particle_probabilities_on_anchors(Particle *p, multifit::FittingSolutionRecords sols)
/Users/drussel/src/imp/debug/include/IMP/multifit/anchor_graph.h:41: Warning: The following parameters of IMP::multifit::ProbabilisticAnchorGraph::set_particle_probabilities_on_anchors(Particle *p, multifit::FittingSolutionRecords sols) are not documented:
  parameter 'p'
drussel commented 11 years ago

/Users/drussel/src/imp/debug/include/IMP/multifit/anchor_graph.h:41: Warning: argument 'comp_ind' of command @param is not found in the argument list of IMP::multifit::ProbabilisticAnchorGraph::set_particle_probabilities_on_anchors(Particle p, multifit::FittingSolutionRecords sols) /Users/drussel/src/imp/debug/include/IMP/multifit/anchor_graph.h:41: Warning: argument 'comp_cen' of command @param is not found in the argument list of IMP::multifit::ProbabilisticAnchorGraph::set_particle_probabilities_on_anchors(Particle p, multifit::FittingSolutionRecords sols)

/Users/drussel/src/imp/debug/include/IMP/multifit/anchor_graph.h:41: Warning: The following parameters of IMP::multifit::ProbabilisticAnchorGraph::set_particle_probabilities_on_anchors(Particle *p, multifit::FittingSolutionRecords sols) are not documented:
  parameter 'p'
/Users/drussel/src/imp/debug/include/IMP/multifit/fft_based_rigid_fitting.h:189: Warning: The following parameters of IMP::multifit::fft_based_rigid_fitting(atom::Hierarchy mol2fit, em::DensityMap *dmap, double density_threshold, double angle_sampling_interval_rad) are not documented:
  parameter 'density_threshold'
/Users/drussel/src/imp/debug/include/IMP/multifit/anchor_utilities.h:45: Warning: argument 'sse_ps' of command @param is not found in the argument list of IMP::multifit::get_anchor_indices_matching_secondary_structure(const AnchorsData &ad, const atom::SecondaryStructureResidues &ssrs, Float max_rmsd=0.7)
/Users/drussel/src/imp/debug/include/IMP/multifit/anchor_utilities.h:45: Warning: argument 'min_correlation' of command @param is not found in the argument list of IMP::multifit::get_anchor_indices_matching_secondary_structure(const AnchorsData &ad, const atom::SecondaryStructureResidues &ssrs, Float max_rmsd=0.7)
/Users/drussel/src/imp/debug/include/IMP/multifit/anchor_utilities.h:45: Warning: The following parameters of IMP::multifit::get_anchor_indices_matching_secondary_structure(const AnchorsData &ad, const atom::SecondaryStructureResidues &ssrs, Float max_rmsd=0.7) are not documented:
  parameter 'ssrs'
  parameter 'max_rmsd'
/Users/drussel/src/imp/debug/lib/IMP/multifit/reference.py:28: Warning: argument 'if' of command @param is not found in the argument list of IMP.multifit.reference::get_components_placement_scores(assembly,native_assembly,align=False)
/Users/drussel/src/imp/debug/lib/IMP/multifit/reference.py:28: Warning: The following parameters of IMP::multifit.reference.get_components_placement_scores(assembly,native_assembly,align=False) are not documented:
  parameter 'align'