Help regarding formfactor file genration from SAX data and pdb file

[vas2201]

Hello imp users and developers ! is their anyway that i can generate the form factor file from SAX data and pdb file using imp to use in plumed-gromacs calculations ?.

Previously Dr.Magnus Andersson lab generated the source code (attached) using IMP 2.3.0 (source code recompiled with IMP2.3.0) to generated form factor file from SAX data and pdb file. http://pubs.acs.org/doi/abs/10.1021/acs.jctc.5b00299 (SAXS-Guided Metadynamics) source code : saxs_cv_package.zip

However, while installing imp2.3.0, I had compiler issues (please see below). could you please instruct me installation of imp2.30 or 2.8.0 with given source code on Mac or redhat or ubuntu ?

Installation errors srinivas@tmp002500ee0565%cmake /opt/local/NMR/imp-2.3.0 -DCMAKE_INSTALL_PREFIX=/opt/local/NMR/imp-2.3.0/build CMake Error: Parse error in cache file /opt/local/NMR/imp-2.3.0/build/CMakeCache.txt. Offending entry: /SDKs/MacOSX10.11.sdk CMake Error: The source "/opt/local/NMR/imp-2.3.0/CMakeLists.txt" does not match the source "/opt/local/NMR/imp-2.8.0/CMakeLists.txt" used to generate cache. Re-run cmake with a different source directory. srinivas@tmp002500ee0565%rm -r CMakeCache.txt srinivas@tmp002500ee0565%pwd /opt/local/NMR/imp-2.3.0/build srinivas@tmp002500ee0565%cd .. srinivas@tmp002500ee0565%rm -r CMakeCache.txt rm: CMakeCache.txt: No such file or directory srinivas@tmp002500ee0565%cd build srinivas@tmp002500ee0565%cmake /opt/local/NMR/imp-2.3.0 -DCMAKE_INSTALL_PREFIX=/opt/local/NMR/imp-2.3.0/build -- The C compiler identification is Clang -- The CXX compiler identification is Clang -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Running check_common_problems -- Running clean_build_dir -- Running setup_cmake -- Enabling clang C++11 support -- Wrong doxygen version at /usr/local/bin/doxygen. Found 1.8.13, but needed 1.8.6 -- Python binary is /usr/bin/python (version 2.7.10) -- Found PythonLibs: /usr/lib/libpython2.7.dylib (found suitable exact version "2.7.10") -- Running setup -- Running setup_all -- Running making containers -- Running setup_module_alias for kernel -- Setting up alias for module kernel as -- Boost version: 1.65.0 -- Found the following Boost libraries: -- system -- filesystem -- thread -- program_options -- Performing Test IMP_COMPILER_HAS_AUTO -- Performing Test IMP_COMPILER_HAS_AUTO - Success -- Performing Test IMP_COMPILER_HAS_DEBUG_VECTOR -- Performing Test IMP_COMPILER_HAS_DEBUG_VECTOR - Failed -- Found GPERFTOOLS -- Performing Test GPerfTools_found -- Performing Test GPerfTools_found - Success -- Found GPerfTools Log4CXX not found -- Performing Test TCMalloc_HeapChecker_found -- Performing Test TCMalloc_HeapChecker_found - Failed TCMalloc_HeapChecker not found -- Performing Test TCMalloc_HeapProfiler_found -- Performing Test TCMalloc_HeapProfiler_found - Failed TCMalloc_HeapProfiler not found -- Running generate paths.cpp Configuring module base ... yes -- Running setup_swig_wrappers base -- Running IMP.base making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/base.h Configuring module benchmark ... yes -- Running setup_swig_wrappers benchmark -- Running IMP.benchmark making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/benchmark.h -- Build type: Release -- USING CXXFLAGS = ' -w -O3 -DNDEBUG' -- USING EXEFLAGS = ' -framework CoreFoundation ' -- Targetting Unix Makefiles -- Using /usr/bin/c++ compiler. -- DARWIN_VERSION=15 -- Mac Leopard detected -- Requested component: MPFR -- Requested component: GMP Configuring module cgal ... yes -- Running setup_swig_wrappers cgal -- Running IMP.cgal making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/cgal.h Configuring module kmeans ... yes -- Running setup_swig_wrappers kmeans -- Running IMP.kmeans making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/kmeans.h Configuring module module_template ... yes -- Running setup_swig_wrappers module_template -- Running IMP.module_template making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/module_template.h -- Found MPI: /usr/local/Cellar/open-mpi/2.1.1/lib/libmpi.dylib -- MPI not found Configuring module mpi ... MPI not found Different data/build_info/sorted_modules -mpi Module IMP.mpi disabled Configuring module test ... yes -- Running setup_swig_wrappers test -- Running IMP.test making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/test.h -- Found ANN -- Performing Test ANN_found -- Performing Test ANN_found - Success -- Found ANN Configuring module algebra ... yes -- Running setup_swig_wrappers algebra -- Running IMP.algebra making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/algebra.h Configuring module kernel ... yes -- Running setup_swig_wrappers kernel -- Running IMP.kernel making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/kernel.h Configuring module display ... yes -- Running setup_swig_wrappers display -- Running IMP.display making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/display.h -- Found GSL -- Performing Test GSL_found -- Performing Test GSL_found - Success -- Found GSL Configuring module gsl ... yes -- Running setup_swig_wrappers gsl -- Running IMP.gsl making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/gsl.h Configuring module parallel ... yes -- Running setup_swig_wrappers parallel -- Running IMP.parallel making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/parallel.h -- Found HDF5 -- Performing Test HDF5_found -- Performing Test HDF5_found - Success -- Found HDF5 Configuring module score_functor ... yes -- Running setup_swig_wrappers score_functor -- Running IMP.score_functor making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/score_functor.h Configuring module statistics ... yes -- Running setup_swig_wrappers statistics -- Running IMP.statistics making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/statistics.h Configuring module core ... yes -- Running setup_swig_wrappers core -- Running IMP.core making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/core.h Configuring module container ... yes -- Running setup_swig_wrappers container -- Running IMP.container making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/container.h Configuring module modeller ... yes -- Running setup_swig_wrappers modeller -- Running IMP.modeller making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/modeller.h Configuring module symmetry ... yes -- Running setup_swig_wrappers symmetry -- Running IMP.symmetry making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/symmetry.h Configuring module atom ... yes -- Running setup_swig_wrappers atom -- Running IMP.atom making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/atom.h Configuring module pmi ... yes -- Running setup_swig_wrappers pmi -- Running IMP.pmi making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/pmi.h Configuring module scratch ... yes -- Running setup_swig_wrappers scratch -- Running IMP.scratch making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/scratch.h Configuring module em ... yes -- Running setup_swig_wrappers em -- Running IMP.em making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/em.h Configuring module kinematics ... yes -- Running setup_swig_wrappers kinematics -- Running IMP.kinematics making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/kinematics.h Configuring module misc ... yes -- Running setup_swig_wrappers misc -- Running IMP.misc making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/misc.h -- Building internal RMF -- Boost version: 1.65.0 -- Found the following Boost libraries: -- system -- filesystem -- thread -- program_options -- iostreams -- Found HDF5: debug;/usr/local/Cellar/hdf5/1.10.1_2/lib/libhdf5_hl.dylib;/usr/local/Cellar/hdf5/1.10.1_2/lib/libhdf5.dylib;/usr/local/opt/szip/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib;optimized;/usr/local/Cellar/hdf5/1.10.1_2/lib/libhdf5_hl.dylib;/usr/local/Cellar/hdf5/1.10.1_2/lib/libhdf5.dylib;/usr/local/opt/szip/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib -- Deprecated backends (and hdf5) are enabled -- Disabling C++11 due to clang and older boost -- Running Making RMF/HDF5.h -- Updating /opt/local/NMR/imp-2.3.0/build/src/dependency/RMF/include/RMF/HDF5.h -- Running Making RMF.h -- Updating /opt/local/NMR/imp-2.3.0/build/src/dependency/RMF/include/RMF.h -- Running setup_cmake.py -- Running Running setup_cmake.py -- Logging disabled -- Using VMD headers found in /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/plugins/vmd/include -- Found SWIG: swig (found suitable version "3.0.12", required is "1.3.40") -- Wrong doxygen version at /usr/local/bin/doxygen. Found 1.8.13, but needed 1.8.6 -- RMF doc disabled Configuring module rmf ... yes -- Running setup_swig_wrappers rmf -- Running IMP.rmf making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/rmf.h Configuring module rotamer ... yes -- Running setup_swig_wrappers rotamer -- Running IMP.rotamer making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/rotamer.h Configuring module saxs ... yes -- Running setup_swig_wrappers saxs -- Running IMP.saxs making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/saxs.h -- Found HDF5 -- Found HDF5 Configuring module domino ... yes -- Running setup_swig_wrappers domino -- Running IMP.domino making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/domino.h Configuring module isd ... yes -- Running setup_swig_wrappers isd -- Running IMP.isd making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/isd.h -- Found FFTW3 -- Performing Test FFTW3_found -- Performing Test FFTW3_found - Success -- Found FFTW3 OpenCV21 not found OpenCV22 not found em2d is disabled Different data/build_info/sorted_modules -em2d Module IMP.em2d disabled ExampleDependency not found Configuring module example ... yes -- Running setup_swig_wrappers example -- Running IMP.example making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/example.h -- Found FFTW3 -- Found FFTW3 Configuring module multifit ... yes -- Running setup_swig_wrappers multifit -- Running IMP.multifit making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/multifit.h Configuring module pepdock ... yes -- Running setup_swig_wrappers pepdock -- Running IMP.pepdock making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/pepdock.h -- Found LIBTAU -- Performing Test libTau_found -- Performing Test libTau_found - Success -- Found libTau Configuring module cnmultifit ... yes -- Running setup_swig_wrappers cnmultifit -- Running IMP.cnmultifit making all header -- Updating /opt/local/NMR/imp-2.3.0/build/include/IMP/cnmultifit.h -- Running setup_swig_dependencies -- Creating thread pool with 32 subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_base.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_kmeans.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_kmeans.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_kmeans.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_kmeans.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_kmeans.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_cgal.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_module_template.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_module_template.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_module_template.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_module_template.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_module_template.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_benchmark.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_benchmark.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_benchmark.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_benchmark.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_benchmark.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_test.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_test.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_test.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_test.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_test.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_algebra.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_score_functor.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_gsl.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_gsl.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_gsl.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_gsl.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_gsl.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_statistics.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_statistics.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_statistics.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_statistics.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_statistics.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_parallel.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_parallel.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_parallel.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_parallel.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_parallel.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_display.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_kernel.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_symmetry.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_symmetry.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_symmetry.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_symmetry.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_symmetry.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_modeller.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_modeller.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_modeller.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_modeller.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_modeller.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_container.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_pmi.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_pmi.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_pmi.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_pmi.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_pmi.i:116: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_rotamer.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_rotamer.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_rotamer.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_rotamer.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_rotamer.i:121: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_atom.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_kinematics.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_kinematics.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_kinematics.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_kinematics.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_kinematics.i:121: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i' swig/IMP_kinematics.impl.i:25: Error: Unknown SWIG preprocessor directive: IMP (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_kinematics.impl.i:26: Error: Unknown SWIG preprocessor directive: IMP (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_kinematics.impl.i:27: Error: Unknown SWIG preprocessor directive: IMP (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_misc.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_misc.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_misc.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_misc.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_misc.i:121: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_scratch.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_scratch.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_scratch.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_scratch.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_scratch.i:116: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_em.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_em.i:114: Warning 201: Unable to find 'std_vector.i' swig/IMP_em.i:115: Warning 201: Unable to find 'std_string.i' swig/IMP_em.i:116: Warning 201: Unable to find 'std_pair.i' swig/IMP_em.i:126: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_statistics.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_statistics.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_statistics.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_statistics.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_core.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/opt/local/NMR/imp-2.3.0/build/src/dependency/RMF/include -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include swig/IMP_rmf.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_rmf.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_rmf.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_rmf.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_rmf.i:121: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:44: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:46: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:47: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:48: Warning 201: Unable to find 'std_pair.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_saxs.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_saxs.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_saxs.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_saxs.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_saxs.i:121: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_isd.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_isd.i:124: Warning 201: Unable to find 'std_vector.i' swig/IMP_isd.i:125: Warning 201: Unable to find 'std_string.i' swig/IMP_isd.i:126: Warning 201: Unable to find 'std_pair.i' swig/IMP_isd.i:136: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_statistics.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_statistics.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_statistics.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_statistics.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i' swig/IMP_em.i:114: Warning 201: Unable to find 'std_vector.i' swig/IMP_em.i:115: Warning 201: Unable to find 'std_string.i' swig/IMP_em.i:116: Warning 201: Unable to find 'std_pair.i' swig/IMP_em.i:126: Warning 201: Unable to find 'typemaps.i' swig/IMP_saxs.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_saxs.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_saxs.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_saxs.i:121: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/opt/local/NMR/imp-2.3.0/build/src/dependency/RMF/include -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include swig/IMP_domino.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_domino.i:119: Warning 201: Unable to find 'std_vector.i' swig/IMP_domino.i:120: Warning 201: Unable to find 'std_string.i' swig/IMP_domino.i:121: Warning 201: Unable to find 'std_pair.i' swig/IMP_domino.i:131: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_statistics.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_statistics.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_statistics.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_statistics.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i' swig/IMP_rmf.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_rmf.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_rmf.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_rmf.i:121: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:44: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:46: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:47: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:48: Warning 201: Unable to find 'std_pair.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:25: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:26: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:27: Warning 201: Unable to find 'std_pair.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:33: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/opt/local/NMR/imp-2.3.0/build/src/dependency/RMF/include -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include swig/IMP_pepdock.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_pepdock.i:124: Warning 201: Unable to find 'std_vector.i' swig/IMP_pepdock.i:125: Warning 201: Unable to find 'std_string.i' swig/IMP_pepdock.i:126: Warning 201: Unable to find 'std_pair.i' swig/IMP_pepdock.i:136: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_statistics.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_statistics.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_statistics.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_statistics.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i' swig/IMP_rmf.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_rmf.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_rmf.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_rmf.i:121: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:44: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:46: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:47: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:48: Warning 201: Unable to find 'std_pair.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:25: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:26: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:27: Warning 201: Unable to find 'std_pair.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:33: Warning 201: Unable to find 'typemaps.i' swig/IMP_domino.i:119: Warning 201: Unable to find 'std_vector.i' swig/IMP_domino.i:120: Warning 201: Unable to find 'std_string.i' swig/IMP_domino.i:121: Warning 201: Unable to find 'std_pair.i' swig/IMP_domino.i:131: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/opt/local/NMR/imp-2.3.0/build/src/dependency/RMF/include -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include swig/IMP_example.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_example.i:124: Warning 201: Unable to find 'std_vector.i' swig/IMP_example.i:125: Warning 201: Unable to find 'std_string.i' swig/IMP_example.i:126: Warning 201: Unable to find 'std_pair.i' swig/IMP_example.i:136: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_statistics.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_statistics.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_statistics.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_statistics.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i' swig/IMP_rmf.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_rmf.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_rmf.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_rmf.i:121: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:44: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:46: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:47: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:48: Warning 201: Unable to find 'std_pair.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:25: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:26: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:27: Warning 201: Unable to find 'std_pair.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:33: Warning 201: Unable to find 'typemaps.i' swig/IMP_domino.i:119: Warning 201: Unable to find 'std_vector.i' swig/IMP_domino.i:120: Warning 201: Unable to find 'std_string.i' swig/IMP_domino.i:121: Warning 201: Unable to find 'std_pair.i' swig/IMP_domino.i:131: Warning 201: Unable to find 'typemaps.i'

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/opt/local/NMR/imp-2.3.0/build/src/dependency/RMF/include -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include swig/IMP_multifit.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_multifit.i:129: Warning 201: Unable to find 'std_vector.i' swig/IMP_multifit.i:130: Warning 201: Unable to find 'std_string.i' swig/IMP_multifit.i:131: Warning 201: Unable to find 'std_pair.i' swig/IMP_multifit.i:141: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_statistics.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_statistics.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_statistics.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_statistics.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i' swig/IMP_em.i:114: Warning 201: Unable to find 'std_vector.i' swig/IMP_em.i:115: Warning 201: Unable to find 'std_string.i' swig/IMP_em.i:116: Warning 201: Unable to find 'std_pair.i' swig/IMP_em.i:126: Warning 201: Unable to find 'typemaps.i' swig/IMP_rmf.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_rmf.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_rmf.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_rmf.i:121: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:44: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:46: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:47: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:48: Warning 201: Unable to find 'std_pair.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:25: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:26: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:27: Warning 201: Unable to find 'std_pair.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:33: Warning 201: Unable to find 'typemaps.i' swig/IMP_domino.i:119: Warning 201: Unable to find 'std_vector.i' swig/IMP_domino.i:120: Warning 201: Unable to find 'std_string.i' swig/IMP_domino.i:121: Warning 201: Unable to find 'std_pair.i' swig/IMP_domino.i:131: Warning 201: Unable to find 'typemaps.i' swig/IMP_multifit.impl.i:35: Error: Unknown SWIG preprocessor directive: IMP (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/opt/local/NMR/imp-2.3.0/build/src/dependency/RMF/include -I/opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include swig/IMP_cnmultifit.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_cnmultifit.i:134: Warning 201: Unable to find 'std_vector.i' swig/IMP_cnmultifit.i:135: Warning 201: Unable to find 'std_string.i' swig/IMP_cnmultifit.i:136: Warning 201: Unable to find 'std_pair.i' swig/IMP_cnmultifit.i:146: Warning 201: Unable to find 'typemaps.i' swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i' swig/IMP_base.i:56: Warning 201: Unable to find 'std_string.i' swig/IMP_base.i:57: Warning 201: Unable to find 'std_pair.i' swig/IMP_base.i:67: Warning 201: Unable to find 'typemaps.i' swig/IMP_cgal.i:60: Warning 201: Unable to find 'std_vector.i' swig/IMP_cgal.i:61: Warning 201: Unable to find 'std_string.i' swig/IMP_cgal.i:62: Warning 201: Unable to find 'std_pair.i' swig/IMP_cgal.i:72: Warning 201: Unable to find 'typemaps.i' swig/IMP_algebra.i:68: Warning 201: Unable to find 'std_vector.i' swig/IMP_algebra.i:69: Warning 201: Unable to find 'std_string.i' swig/IMP_algebra.i:70: Warning 201: Unable to find 'std_pair.i' swig/IMP_algebra.i:80: Warning 201: Unable to find 'typemaps.i' swig/IMP_kernel.i:79: Warning 201: Unable to find 'std_vector.i' swig/IMP_kernel.i:80: Warning 201: Unable to find 'std_string.i' swig/IMP_kernel.i:81: Warning 201: Unable to find 'std_pair.i' swig/IMP_kernel.i:91: Warning 201: Unable to find 'typemaps.i' swig/IMP_display.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_display.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_display.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_display.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_score_functor.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_score_functor.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_score_functor.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_score_functor.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_statistics.i:84: Warning 201: Unable to find 'std_vector.i' swig/IMP_statistics.i:85: Warning 201: Unable to find 'std_string.i' swig/IMP_statistics.i:86: Warning 201: Unable to find 'std_pair.i' swig/IMP_statistics.i:96: Warning 201: Unable to find 'typemaps.i' swig/IMP_core.i:94: Warning 201: Unable to find 'std_vector.i' swig/IMP_core.i:95: Warning 201: Unable to find 'std_string.i' swig/IMP_core.i:96: Warning 201: Unable to find 'std_pair.i' swig/IMP_core.i:106: Warning 201: Unable to find 'typemaps.i' swig/IMP_container.i:99: Warning 201: Unable to find 'std_vector.i' swig/IMP_container.i:100: Warning 201: Unable to find 'std_string.i' swig/IMP_container.i:101: Warning 201: Unable to find 'std_pair.i' swig/IMP_container.i:111: Warning 201: Unable to find 'typemaps.i' swig/IMP_atom.i:104: Warning 201: Unable to find 'std_vector.i' swig/IMP_atom.i:105: Warning 201: Unable to find 'std_string.i' swig/IMP_atom.i:106: Warning 201: Unable to find 'std_pair.i' swig/IMP_atom.i:116: Warning 201: Unable to find 'typemaps.i' swig/IMP_em.i:114: Warning 201: Unable to find 'std_vector.i' swig/IMP_em.i:115: Warning 201: Unable to find 'std_string.i' swig/IMP_em.i:116: Warning 201: Unable to find 'std_pair.i' swig/IMP_em.i:126: Warning 201: Unable to find 'typemaps.i' swig/IMP_rmf.i:109: Warning 201: Unable to find 'std_vector.i' swig/IMP_rmf.i:110: Warning 201: Unable to find 'std_string.i' swig/IMP_rmf.i:111: Warning 201: Unable to find 'std_pair.i' swig/IMP_rmf.i:121: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:44: Warning 201: Unable to find 'typemaps.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:46: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:47: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF.i:48: Warning 201: Unable to find 'std_pair.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:25: Warning 201: Unable to find 'std_vector.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:26: Warning 201: Unable to find 'std_string.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:27: Warning 201: Unable to find 'std_pair.i' /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/swig/RMF_HDF5.i:33: Warning 201: Unable to find 'typemaps.i' swig/IMP_domino.i:119: Warning 201: Unable to find 'std_vector.i' swig/IMP_domino.i:120: Warning 201: Unable to find 'std_string.i' swig/IMP_domino.i:121: Warning 201: Unable to find 'std_pair.i' swig/IMP_domino.i:131: Warning 201: Unable to find 'typemaps.i' swig/IMP_multifit.i:129: Warning 201: Unable to find 'std_vector.i' swig/IMP_multifit.i:130: Warning 201: Unable to find 'std_string.i' swig/IMP_multifit.i:131: Warning 201: Unable to find 'std_pair.i' swig/IMP_multifit.i:141: Warning 201: Unable to find 'typemaps.i' swig/IMP_multifit.impl.i:35: Error: Unknown SWIG preprocessor directive: IMP (if this is a block of target language code, delimit it with %{ and %}) CMake Error at modules/base/pyext/CMakeLists.txt:35 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/base_swig.deps" cannot be read.

CMake Error at modules/benchmark/pyext/CMakeLists.txt:35 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/benchmark_swig.deps" cannot be read.

CMake Error at modules/cgal/pyext/CMakeLists.txt:38 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/cgal_swig.deps" cannot be read.

CMake Error at modules/kmeans/pyext/CMakeLists.txt:35 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/kmeans_swig.deps" cannot be read.

CMake Error at modules/module_template/pyext/CMakeLists.txt:35 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/module_template_swig.deps" cannot be read.

CMake Error at modules/test/pyext/CMakeLists.txt:35 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/test_swig.deps" cannot be read.

CMake Error at modules/algebra/pyext/CMakeLists.txt:41 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/algebra_swig.deps" cannot be read.

CMake Error at modules/kernel/pyext/CMakeLists.txt:41 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/kernel_swig.deps" cannot be read.

CMake Error at modules/display/pyext/CMakeLists.txt:41 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/display_swig.deps" cannot be read.

CMake Error at modules/gsl/pyext/CMakeLists.txt:44 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/gsl_swig.deps" cannot be read.

CMake Error at modules/parallel/pyext/CMakeLists.txt:41 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/parallel_swig.deps" cannot be read.

CMake Error at modules/score_functor/pyext/CMakeLists.txt:44 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/score_functor_swig.deps" cannot be read.

CMake Error at modules/statistics/pyext/CMakeLists.txt:41 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/statistics_swig.deps" cannot be read.

CMake Error at modules/core/pyext/CMakeLists.txt:44 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/core_swig.deps" cannot be read.

CMake Error at modules/container/pyext/CMakeLists.txt:44 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/container_swig.deps" cannot be read.

CMake Error at modules/modeller/pyext/CMakeLists.txt:44 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/modeller_swig.deps" cannot be read.

CMake Error at modules/symmetry/pyext/CMakeLists.txt:44 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/symmetry_swig.deps" cannot be read.

CMake Error at modules/atom/pyext/CMakeLists.txt:47 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/atom_swig.deps" cannot be read.

CMake Error at modules/pmi/pyext/CMakeLists.txt:44 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/pmi_swig.deps" cannot be read.

CMake Error at modules/scratch/pyext/CMakeLists.txt:44 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/scratch_swig.deps" cannot be read.

CMake Error at modules/em/pyext/CMakeLists.txt:47 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/em_swig.deps" cannot be read.

CMake Error at modules/kinematics/pyext/CMakeLists.txt:47 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/kinematics_swig.deps" cannot be read.

CMake Error at modules/misc/pyext/CMakeLists.txt:47 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/misc_swig.deps" cannot be read.

CMake Error at modules/rmf/pyext/CMakeLists.txt:50 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/rmf_swig.deps" cannot be read.

CMake Error at modules/rotamer/pyext/CMakeLists.txt:47 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/rotamer_swig.deps" cannot be read.

CMake Error at modules/saxs/pyext/CMakeLists.txt:47 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/saxs_swig.deps" cannot be read.

CMake Error at modules/domino/pyext/CMakeLists.txt:53 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/domino_swig.deps" cannot be read.

CMake Error at modules/isd/pyext/CMakeLists.txt:47 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/isd_swig.deps" cannot be read.

CMake Error at modules/example/pyext/CMakeLists.txt:56 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/example_swig.deps" cannot be read.

CMake Error at modules/multifit/pyext/CMakeLists.txt:56 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/multifit_swig.deps" cannot be read.

CMake Error at modules/pepdock/pyext/CMakeLists.txt:53 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/pepdock_swig.deps" cannot be read.

CMake Error at modules/cnmultifit/pyext/CMakeLists.txt:59 (file): file STRINGS file "/opt/local/NMR/imp-2.3.0/build/src/cnmultifit_swig.deps" cannot be read.

Configuring application EMageFit ... no Different data/build_info/applications -EMageFit Application EMageFit disabled Configuring application cnmultifit_tools ... yes Configuring application em_tools ... yes Configuring application example_app ... yes Configuring application ffgen_src ... yes Configuring application foxs ... yes Configuring application integrative_docking ... no Different data/build_info/applications -integrative_docking Application integrative_docking disabled Configuring application ligand_score ... yes Configuring application multifit_tools ... yes Configuring application pdb_tools ... yes Configuring application rmf_tools ... yes Configuring application saxs_merge ... yes Configuring application saxs_tools ... yes -- Running setup_imppy -- Documentation disabled as doxygen not found -- Configuring incomplete, errors occurred! srinivas@tmp002500ee0565%

[vas2201]

I changed to swig2.0.4 version. there is no errors about swig dependencies. but i have errors after issuing make command [ 44%] Building CXX object src/dependency/RMF/swig/CMakeFiles/_RMF_HDF5.dir/////lib/RMF_HDF5PYTHON_wrap.cxx.o [ 44%] Building CXX object src/dependency/RMF/benchmark/CMakeFiles/RMF-benchmark_rmf.cpp.dir/benchmark_rmf.cpp.o [ 44%] Linking CXX shared module ../../../../../lib/rmfplugin.so [ 44%] Built target RMF-vmd [ 44%] Running swig on kernel /opt/local/NMR/imp-2.3.0/build/lib/RMF_HDF5PYTHON_wrap.cxx:72458:71: error: no viable conversion from 'std::string' (aka 'basic_string<char, char_traits, allocator >') to 'unsigned int' result = ((RMF::HDF5::ConstGroup const )arg1)->get_child_group(arg2); ^~~~ /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include/RMF/HDF5/ConstGroup.h:94:45: note: passing argument to parameter 'i' here ConstGroup get_child_group(unsigned int i) const; ^ /opt/local/NMR/imp-2.3.0/build/lib/RMF_HDF5PYTHON_wrap.cxx:72593:80: error: no viable conversion from 'std::string' (aka 'basic_string<char, char_traits, allocator >') to 'unsigned int' result = (bool)((RMF::HDF5::ConstGroup const )arg1)->get_child_is_group(arg2); ^~~~ /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include/RMF/HDF5/ConstGroup.h:92:42: note: passing argument to parameter 'i' here bool get_child_is_group(unsigned int i) const; ^ /opt/local/NMR/imp-2.3.0/build/lib/RMF_HDF5PYTHON_wrap.cxx:83605:66: error: no viable conversion from 'std::string' (aka 'basic_string<char, char_traits, allocator >') to 'unsigned int' result = ((RMF::HDF5::Group const *)arg1)->get_child_group(arg2); ^~~~ /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include/RMF/HDF5/Group.h:115:38: note: passing argument to parameter 'i' here Group get_child_group(unsigned int i) const; ^ [ 44%] Linking CXX executable test_buffer [ 44%] Built target RMF-test_buffer.cpp Scanning dependencies of target IMP.kernel-test_pdb.cpp [ 44%] Building CXX object modules/kernel/test/CMakeFiles/IMP.kernel-test_pdb.cpp.dir/test_pdb.cpp.o 3 errors generated. make[2]: [src/dependency/RMF/swig/CMakeFiles/_RMF_HDF5.dir/////lib/RMF_HDF5PYTHON_wrap.cxx.o] Error 1 make[1]: [src/dependency/RMF/swig/CMakeFiles/_RMF_HDF5.dir/all] Error 2 make[1]: Waiting for unfinished jobs.... Scanning dependencies of target _RMF [ 44%] Building CXX object src/dependency/RMF/swig/CMakeFiles/_RMF.dir/////lib/RMFPYTHON_wrap.cxx.o /opt/local/NMR/imp-2.3.0/build/lib/RMFPYTHON_wrap.cxx:98400:41: error: no matching constructor for initialization of 'RMF::BufferHandle' result = (RMF::BufferHandle )new RMF::BufferHandle((std::vector< char,std::allocator< char > > const &)arg1); ^ ~~~~~~~~~~~~~ /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include/RMF/BufferHandle.h:22:7: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'const std::vector<char, std::allocator >' to 'const RMF::BufferHandle' for 1st argument class BufferHandle : public BufferConstHandle { ^ /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include/RMF/BufferHandle.h:22:7: note: candidate constructor (the implicit move constructor) not viable: no known conversion from 'const std::vector<char, std::allocator >' to 'RMF::BufferHandle' for 1st argument /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include/RMF/BufferHandle.h:28:3: note: candidate constructor not viable: no known conversion from 'const std::vector<char, std::allocator >' to 'std::string' (aka 'basic_string<char, char_traits, allocator >') for 1st argument BufferHandle(std::string st) : BufferConstHandle(st) {} ^ /opt/local/NMR/imp-2.3.0/modules/rmf/dependency/RMF_source/include/RMF/BufferHandle.h:25:3: note: candidate constructor not viable: requires 0 arguments, but 1 was provided BufferHandle() : BufferConstHandle(std::vector()) {} ^ [ 44%] Linking CXX executable test_avro2_low_level [ 44%] Built target RMF-test_avro2_low_level.cpp [ 44%] Linking CXX executable kernel/test_pdb [ 44%] Built target IMP.kernel-test_pdb.cpp [ 44%] Linking CXX executable benchmark_rmf [ 44%] Built target RMF-benchmark_rmf.cpp Scanning dependencies of target IMP.kernel-python [ 44%] Building CXX object modules/kernel/pyext/CMakeFiles/IMP.kernel-python.dir///__/src/kernel_swig/wrap.cpp.o 1 error generated. make[2]: [src/dependency/RMF/swig/CMakeFiles/_RMF.dir/////lib/RMFPYTHON_wrap.cxx.o] Error 1 make[1]: [src/dependency/RMF/swig/CMakeFiles/_RMF.dir/all] Error 2 [ 44%] Linking CXX executable test_avro2_validate [ 44%] Built target RMF-test_avro2_validate.cpp [ 44%] Linking CXX shared module ../../../lib/_IMP_algebra.so [ 44%] Built target IMP.algebra-python [ 44%] Linking CXX shared module ../../../lib/_IMP_kernel.so [ 44%] Built target IMP.kernel-python make: [all] Error 2 srinivas@tmp002500ee0565%

[benmwebb]

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_base.i :3: Warning 201: Unable to find 'tcl8.swg' swig/IMP_base.i:55: Warning 201: Unable to find 'std_vector.i'

These are files that are part of the standard SWIG distribution, so if it can't find them, there is something wrong with your copy of SWIG - not an IMP problem.

I changed to swig2.0.4 version. there is no errors about swig dependencies. but i have errors after issuing make command

I'm not sure what's going on here, but it's probably confused by leftover files from a previous build. You should try deleting everything and using a fresh checkout. If the problem continues, I'll need to know what OS you're using to have any chance of reproducing your problem.

[benmwebb]

Seeing no further comments here, I'm going to assume this fixed your problem. Reopen if it didn't.

[vas2201]

Hi benmwebb, sorry for late reply ! i am using Mac OSX EI Capitan 10.11.6 (15G17023), I just started installatin of imp-2.3.0 version with given source code of SAX fftgen on mac. i am getting following error. could you please help me about the same. Thanking you ! srinivas@tmp002500ee0565%cmake /Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0 -DCMAKE_INSTALL_PREFIX=/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/build -- Running check_common_problems -- Running clean_build_dir -- Running setup_cmake -- Enabling clang C++11 support -- Wrong doxygen version at /usr/local/bin/doxygen. Found 1.8.13, but needed 1.8.6 -- Python binary is /usr/bin/python (version 2.7.10) -- Running setup -- Running setup_all -- Running making containers -- Running setup_module_alias for kernel -- Setting up alias for module kernel as CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:193 (find_package)

CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:193 (find_package)

CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:193 (find_package)

CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:193 (find_package)

-- Boost version: 1.65.0 -- Found the following Boost libraries: -- system -- filesystem -- thread -- program_options CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:197 (find_package)

CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:197 (find_package)

CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:197 (find_package)

-- Found GPERFTOOLS -- Found GPerfTools Log4CXX not found TCMalloc_HeapChecker not found TCMalloc_HeapProfiler not found -- Running generate paths.cpp Configuring module base ... yes -- Running setup_swig_wrappers base -- Running IMP.base making all header Configuring module benchmark ... yes -- Running setup_swig_wrappers benchmark -- Running IMP.benchmark making all header -- Build type: Release -- USING CXXFLAGS = ' -w -O3 -DNDEBUG' -- USING EXEFLAGS = ' -framework CoreFoundation ' -- Targetting Unix Makefiles -- Using /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ compiler. -- DARWIN_VERSION=15 -- Mac Leopard detected -- Requested component: MPFR -- Requested component: GMP Configuring module cgal ... yes -- Running setup_swig_wrappers cgal -- Running IMP.cgal making all header Configuring module kmeans ... yes -- Running setup_swig_wrappers kmeans -- Running IMP.kmeans making all header Configuring module module_template ... yes -- Running setup_swig_wrappers module_template -- Running IMP.module_template making all header -- MPI found Configuring module mpi ... yes -- Running setup_swig_wrappers mpi -- Running IMP.mpi making all header Configuring module test ... yes -- Running setup_swig_wrappers test -- Running IMP.test making all header -- Found ANN -- Found ANN Configuring module algebra ... yes -- Running setup_swig_wrappers algebra -- Running IMP.algebra making all header Configuring module kernel ... yes -- Running setup_swig_wrappers kernel -- Running IMP.kernel making all header Configuring module display ... yes -- Running setup_swig_wrappers display -- Running IMP.display making all header -- Found GSL -- Found GSL Configuring module gsl ... yes -- Running setup_swig_wrappers gsl -- Running IMP.gsl making all header Configuring module parallel ... yes -- Running setup_swig_wrappers parallel -- Running IMP.parallel making all header -- Found HDF5 -- Found HDF5 Configuring module score_functor ... yes -- Running setup_swig_wrappers score_functor -- Running IMP.score_functor making all header Configuring module statistics ... yes -- Running setup_swig_wrappers statistics -- Running IMP.statistics making all header Configuring module core ... yes -- Running setup_swig_wrappers core -- Running IMP.core making all header Configuring module container ... yes -- Running setup_swig_wrappers container -- Running IMP.container making all header Configuring module modeller ... yes -- Running setup_swig_wrappers modeller -- Running IMP.modeller making all header Configuring module symmetry ... yes -- Running setup_swig_wrappers symmetry -- Running IMP.symmetry making all header Configuring module atom ... yes -- Running setup_swig_wrappers atom -- Running IMP.atom making all header Configuring module pmi ... yes -- Running setup_swig_wrappers pmi -- Running IMP.pmi making all header Configuring module scratch ... yes -- Running setup_swig_wrappers scratch -- Running IMP.scratch making all header Configuring module em ... yes -- Running setup_swig_wrappers em -- Running IMP.em making all header Configuring module kinematics ... yes -- Running setup_swig_wrappers kinematics -- Running IMP.kinematics making all header Configuring module misc ... yes -- Running setup_swig_wrappers misc -- Running IMP.misc making all header -- Building internal RMF CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) modules/rmf/dependency/RMF_source/CMakeLists.txt:21 (find_package)

CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) modules/rmf/dependency/RMF_source/CMakeLists.txt:21 (find_package)

CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) modules/rmf/dependency/RMF_source/CMakeLists.txt:21 (find_package)

CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) modules/rmf/dependency/RMF_source/CMakeLists.txt:21 (find_package)

CMake Warning at /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106500 Call Stack (most recent call first): /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /opt/local/share/cmake-3.9/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES) modules/rmf/dependency/RMF_source/CMakeLists.txt:21 (find_package)

-- Boost version: 1.65.0 -- Found the following Boost libraries: -- system -- filesystem -- thread -- program_options -- iostreams -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Deprecated backends (and hdf5) are enabled -- Enabling clang C++11 support -- Running Making RMF/HDF5.h -- Running Making RMF.h -- Running setup_cmake.py -- Running Running setup_cmake.py -- Logging disabled -- Using VMD headers found in /Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/plugins/vmd/include -- Wrong doxygen version at /usr/local/bin/doxygen. Found 1.8.13, but needed 1.8.6 -- RMF doc disabled Configuring module rmf ... yes -- Running setup_swig_wrappers rmf -- Running IMP.rmf making all header Configuring module rotamer ... yes -- Running setup_swig_wrappers rotamer -- Running IMP.rotamer making all header Configuring module saxs ... yes -- Running setup_swig_wrappers saxs -- Running IMP.saxs making all header -- Found HDF5 -- Found HDF5 Configuring module domino ... yes -- Running setup_swig_wrappers domino -- Running IMP.domino making all header Configuring module isd ... yes -- Running setup_swig_wrappers isd -- Running IMP.isd making all header -- Found FFTW3 -- Found FFTW3 OpenCV21 not found OpenCV22 not found em2d is disabled Different data/build_info/sorted_modules -em2d Module IMP.em2d disabled ExampleDependency not found Configuring module example ... yes -- Running setup_swig_wrappers example -- Running IMP.example making all header -- Found FFTW3 -- Found FFTW3 Configuring module multifit ... yes -- Running setup_swig_wrappers multifit -- Running IMP.multifit making all header Configuring module pepdock ... yes -- Running setup_swig_wrappers pepdock -- Running IMP.pepdock making all header -- Found LIBTAU -- Found libTau Configuring module cnmultifit ... yes -- Running setup_swig_wrappers cnmultifit -- Running IMP.cnmultifit making all header -- Running setup_swig_dependencies -- Creating thread pool with 32 subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_module_template.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_cgal.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_mpi.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_base.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_test.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_kmeans.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing swig/IMP_benchmark.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_kernel.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_gsl.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_parallel.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_statistics.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_score_functor.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_display.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_algebra.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_core.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_container.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_scratch.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_pmi.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_symmetry.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_atom.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_misc.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_rotamer.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/Users/srinivas/Desktop/Software/imp-2.3.0/src/dependency/RMF/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include -I/usr/local/opt/szip/include swig/IMP_rmf.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_em.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_saxs.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_modeller.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_kinematics.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_kinematics.impl.i:25: Error: Unknown SWIG preprocessor directive: IMP (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_kinematics.impl.i:26: Error: Unknown SWIG preprocessor directive: IMP (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_kinematics.impl.i:27: Error: Unknown SWIG preprocessor directive: IMP (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/Users/srinivas/Desktop/Software/imp-2.3.0/src/dependency/RMF/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include -I/usr/local/opt/szip/include swig/IMP_pepdock.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/Users/srinivas/Desktop/Software/imp-2.3.0/src/dependency/RMF/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include -I/usr/local/opt/szip/include swig/IMP_domino.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/Users/srinivas/Desktop/Software/imp-2.3.0/src/dependency/RMF/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include -I/usr/local/opt/szip/include swig/IMP_example.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_isd.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/Users/srinivas/Desktop/Software/imp-2.3.0/src/dependency/RMF/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include -I/usr/local/opt/szip/include swig/IMP_multifit.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_multifit.impl.i:35: Error: Unknown SWIG preprocessor directive: IMP (if this is a block of target language code, delimit it with %{ and %})

subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/swig -I/Users/srinivas/Desktop/Software/imp-2.3.0/imp-2.3.0/modules/rmf/dependency/RMF_source/include -I/Users/srinivas/Desktop/Software/imp-2.3.0/src/dependency/RMF/include -I/usr/local/Cellar/hdf5/1.10.1_2/include -I/usr/local/include -I/usr/local/opt/szip/include swig/IMP_cnmultifit.i swig/IMP_base.directors.i:73: Error: Unknown SWIG preprocessor directive: Do (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_base.directors.i:74: Error: Unknown SWIG preprocessor directive: function (if this is a block of target language code, delimit it with %{ and %}) swig/IMP_multifit.impl.i:35: Error: Unknown SWIG preprocessor directive: IMP (if this is a block of target language code, delimit it with %{ and %}) CMake Error at modules/base/pyext/CMakeLists.txt:35 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/base_swig.deps" cannot be read.

CMake Error at modules/benchmark/pyext/CMakeLists.txt:35 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/benchmark_swig.deps" cannot be read.

CMake Error at modules/cgal/pyext/CMakeLists.txt:38 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/cgal_swig.deps" cannot be read.

CMake Error at modules/kmeans/pyext/CMakeLists.txt:35 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/kmeans_swig.deps" cannot be read.

CMake Error at modules/module_template/pyext/CMakeLists.txt:35 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/module_template_swig.deps" cannot be read.

CMake Error at modules/mpi/pyext/CMakeLists.txt:38 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/mpi_swig.deps" cannot be read.

CMake Error at modules/test/pyext/CMakeLists.txt:35 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/test_swig.deps" cannot be read.

CMake Error at modules/algebra/pyext/CMakeLists.txt:41 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/algebra_swig.deps" cannot be read.

CMake Error at modules/kernel/pyext/CMakeLists.txt:41 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/kernel_swig.deps" cannot be read.

CMake Error at modules/display/pyext/CMakeLists.txt:41 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/display_swig.deps" cannot be read.

CMake Error at modules/gsl/pyext/CMakeLists.txt:44 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/gsl_swig.deps" cannot be read.

CMake Error at modules/parallel/pyext/CMakeLists.txt:41 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/parallel_swig.deps" cannot be read.

CMake Error at modules/score_functor/pyext/CMakeLists.txt:44 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/score_functor_swig.deps" cannot be read.

CMake Error at modules/statistics/pyext/CMakeLists.txt:41 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/statistics_swig.deps" cannot be read.

CMake Error at modules/core/pyext/CMakeLists.txt:44 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/core_swig.deps" cannot be read.

CMake Error at modules/container/pyext/CMakeLists.txt:44 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/container_swig.deps" cannot be read.

CMake Error at modules/modeller/pyext/CMakeLists.txt:44 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/modeller_swig.deps" cannot be read.

CMake Error at modules/symmetry/pyext/CMakeLists.txt:44 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/symmetry_swig.deps" cannot be read.

CMake Error at modules/atom/pyext/CMakeLists.txt:47 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/atom_swig.deps" cannot be read.

CMake Error at modules/pmi/pyext/CMakeLists.txt:44 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/pmi_swig.deps" cannot be read.

CMake Error at modules/scratch/pyext/CMakeLists.txt:44 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/scratch_swig.deps" cannot be read.

CMake Error at modules/em/pyext/CMakeLists.txt:47 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/em_swig.deps" cannot be read.

CMake Error at modules/kinematics/pyext/CMakeLists.txt:47 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/kinematics_swig.deps" cannot be read.

CMake Error at modules/misc/pyext/CMakeLists.txt:47 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/misc_swig.deps" cannot be read.

CMake Error at modules/rmf/pyext/CMakeLists.txt:50 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/rmf_swig.deps" cannot be read.

CMake Error at modules/rotamer/pyext/CMakeLists.txt:47 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/rotamer_swig.deps" cannot be read.

CMake Error at modules/saxs/pyext/CMakeLists.txt:47 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/saxs_swig.deps" cannot be read.

CMake Error at modules/domino/pyext/CMakeLists.txt:53 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/domino_swig.deps" cannot be read.

CMake Error at modules/isd/pyext/CMakeLists.txt:47 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/isd_swig.deps" cannot be read.

CMake Error at modules/example/pyext/CMakeLists.txt:56 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/example_swig.deps" cannot be read.

CMake Error at modules/multifit/pyext/CMakeLists.txt:56 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/multifit_swig.deps" cannot be read.

CMake Error at modules/pepdock/pyext/CMakeLists.txt:53 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/pepdock_swig.deps" cannot be read.

CMake Error at modules/cnmultifit/pyext/CMakeLists.txt:59 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp-2.3.0/src/cnmultifit_swig.deps" cannot be read.

Configuring application EMageFit ... no Different data/build_info/applications -EMageFit Application EMageFit disabled Configuring application cnmultifit_tools ... yes Configuring application em_tools ... yes Configuring application example_app ... yes Configuring application foxs ... yes Configuring application integrative_docking ... no Different data/build_info/applications -integrative_docking Application integrative_docking disabled Configuring application ligand_score ... yes Configuring application multifit_tools ... yes Configuring application pdb_tools ... yes Configuring application rmf_tools ... yes Configuring application saxs_merge ... yes Configuring application saxs_tools ... yes -- Running setup_imppy -- Documentation disabled as doxygen not found -- Configuring incomplete, errors occurred! See also "/Users/srinivas/Desktop/Software/imp-2.3.0/CMakeFiles/CMakeOutput.log". See also "/Users/srinivas/Desktop/Software/imp-2.3.0/CMakeFiles/CMakeError.log". srinivas@tmp002500ee0565%

[vas2201]

CMakeError.log

Performing C++ SOURCE FILE Test IMP_COMPILER_HAS_DEBUG_VECTOR failed with the following output: Change Dir: /Users/srinivas/Desktop/Software/imp-2.3.0/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_b6b17/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_b6b17.dir/build.make CMakeFiles/cmTC_b6b17.dir/build Building CXX object CMakeFiles/cmTC_b6b17.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -w -DIMP_COMPILER_HAS_DEBUG_VECTOR -o CMakeFiles/cmTC_b6b17.dir/src.cxx.o -c /Users/srinivas/Desktop/Software/imp-2.3.0/CMakeFiles/CMakeTmp/src.cxx /Users/srinivas/Desktop/Software/imp-2.3.0/CMakeFiles/CMakeTmp/src.cxx:9:10: fatal error: 'debug/vector' file not found

include <debug/vector>

     ^

1 error generated. make[1]: [CMakeFiles/cmTC_b6b17.dir/src.cxx.o] Error 1 make: [cmTC_b6b17/fast] Error 2

Source file was: /**

• ile nothing.cpp
• rief nothing
• Copyright 2007-2014 IMP Inventors. All rights reserved.

• */

include <debug/vector>

int main(void) { return 0; }

Performing C++ SOURCE FILE Test TCMalloc_HeapChecker_found failed with the following output: Change Dir: /Users/srinivas/Desktop/Software/imp-2.3.0/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_b4079/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_b4079.dir/build.make CMakeFiles/cmTC_b4079.dir/build Building CXX object CMakeFiles/cmTC_b4079.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -I/usr/local/include -w -DTCMalloc_HeapChecker_found -o CMakeFiles/cmTC_b4079.dir/src.cxx.o -c /Users/srinivas/Desktop/Software/imp-2.3.0/CMakeFiles/CMakeTmp/src.cxx Linking CXX executable cmTC_b4079 /opt/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_b4079.dir/link.txt --verbose=1 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -w -DTCMalloc_HeapChecker_found -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_b4079.dir/src.cxx.o -o cmTC_b4079 Undefined symbols for architecture x86_64: "HeapLeakChecker::HeapLeakChecker(char const*)", referenced from: _main in src.cxx.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[1]: [cmTC_b4079] Error 1 make: [cmTC_b4079/fast] Error 2

Source file was:

include <gperftools/heap-checker.h>

int main(int,char*[]) { new HeapLeakChecker("profiler"); return 0; } Performing C++ SOURCE FILE Test TCMalloc_HeapProfiler_found failed with the following output: Change Dir: /Users/srinivas/Desktop/Software/imp-2.3.0/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_222a6/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_222a6.dir/build.make CMakeFiles/cmTC_222a6.dir/build Building CXX object CMakeFiles/cmTC_222a6.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -I/usr/local/include -w -DTCMalloc_HeapProfiler_found -o CMakeFiles/cmTC_222a6.dir/src.cxx.o -c /Users/srinivas/Desktop/Software/imp-2.3.0/CMakeFiles/CMakeTmp/src.cxx Linking CXX executable cmTC_222a6 /opt/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_222a6.dir/link.txt --verbose=1 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -w -DTCMalloc_HeapProfiler_found -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_222a6.dir/src.cxx.o -o cmTC_222a6 Undefined symbols for architecture x86_64: "_HeapProfilerStart", referenced from: _main in src.cxx.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[1]: [cmTC_222a6] Error 1 make: [cmTC_222a6/fast] Error 2

Source file was:

include <gperftools/heap-profiler.h>

int main(int,char*[]) { HeapProfilerStart("profiler"); return 0; }

[benmwebb]

SWIG changed its syntax long ago, so old versions of IMP won't compile any longer. Try again with the latest version, 2.8.0.

[vas2201]

Hi benmwebb,

Thanks for your reply, after I change the swig version 3.xx to 2.0.12, I am not encountering the any errors with swig, but I am having the problem with following 2 errors. Looks like I am almost there in final installation stage if I can fix these two following errors.

Please help me about the same, Thanks for your great help !

Cmake error log :

Performing C++ SOURCE FILE Test IMP_COMPILER_HAS_DEBUG_VECTOR failed with the following output: Change Dir: /Users/srinivas/Desktop/Software/imp/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/cmTryCompileExec.dir/build "/Applications/CMake 2.8-3.app/Contents/bin/cmake" -E cmake_progress_report /Users/srinivas/Desktop/Software/imp/CMakeFiles/CMakeTmp/CMakeFiles 1 Building CXX object CMakeFiles/cmTryCompileExec.dir/src.cxx.o /usr/bin/c++ -w -DIMP_COMPILER_HAS_DEBUG_VECTOR -o CMakeFiles/cmTryCompileExec.dir/src.cxx.o -c /Users/srinivas/Desktop/Software/imp/CMakeFiles/CMakeTmp/src.cxx /Users/srinivas/Desktop/Software/imp/CMakeFiles/CMakeTmp/src.cxx:9:10: fatal error: 'debug/vector' file not found

include <debug/vector>

     ^

1 error generated. make[1]: [CMakeFiles/cmTryCompileExec.dir/src.cxx.o] Error 1 make: [cmTryCompileExec/fast] Error 2

Source file was: /**

• ile nothing.cpp
• rief nothing
• Copyright 2007-2014 IMP Inventors. All rights reserved.

• */

include <debug/vector>

int main(void) { return 0; }

Performing C++ SOURCE FILE Test TCMalloc_HeapChecker_found failed with the following output: Change Dir: /Users/srinivas/Desktop/Software/imp/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/cmTryCompileExec.dir/build "/Applications/CMake 2.8-3.app/Contents/bin/cmake" -E cmake_progress_report /Users/srinivas/Desktop/Software/imp/CMakeFiles/CMakeTmp/CMakeFiles 1 Building CXX object CMakeFiles/cmTryCompileExec.dir/src.cxx.o /usr/bin/c++ -w -DTCMalloc_HeapChecker_found -I/usr/local/include -o CMakeFiles/cmTryCompileExec.dir/src.cxx.o -c /Users/srinivas/Desktop/Software/imp/CMakeFiles/CMakeTmp/src.cxx Linking CXX executable cmTryCompileExec "/Applications/CMake 2.8-3.app/Contents/bin/cmake" -E cmake_link_script CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1 /usr/bin/c++ -w -DTCMalloc_HeapChecker_found -Wl,-search_paths_first -headerpad_max_install_names CMakeFiles/cmTryCompileExec.dir/src.cxx.o -o cmTryCompileExec
Undefined symbols for architecture x86_64: "HeapLeakChecker::HeapLeakChecker(char const*)", referenced from: _main in src.cxx.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[1]: [cmTryCompileExec] Error 1 make: [cmTryCompileExec/fast] Error 2

Source file was:

include <gperftools/heap-checker.h>

int main(int,char*[]) { new HeapLeakChecker("profiler"); return 0; } Performing C++ SOURCE FILE Test TCMalloc_HeapProfiler_found failed with the following output: Change Dir: /Users/srinivas/Desktop/Software/imp/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/cmTryCompileExec.dir/build "/Applications/CMake 2.8-3.app/Contents/bin/cmake" -E cmake_progress_report /Users/srinivas/Desktop/Software/imp/CMakeFiles/CMakeTmp/CMakeFiles 1 Building CXX object CMakeFiles/cmTryCompileExec.dir/src.cxx.o /usr/bin/c++ -w -DTCMalloc_HeapProfiler_found -I/usr/local/include -o CMakeFiles/cmTryCompileExec.dir/src.cxx.o -c /Users/srinivas/Desktop/Software/imp/CMakeFiles/CMakeTmp/src.cxx Linking CXX executable cmTryCompileExec "/Applications/CMake 2.8-3.app/Contents/bin/cmake" -E cmake_link_script CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1 /usr/bin/c++ -w -DTCMalloc_HeapProfiler_found -Wl,-search_paths_first -headerpad_max_install_names CMakeFiles/cmTryCompileExec.dir/src.cxx.o -o cmTryCompileExec
Undefined symbols for architecture x86_64: "_HeapProfilerStart", referenced from: _main in src.cxx.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[1]: [cmTryCompileExec] Error 1 make: [cmTryCompileExec/fast] Error 2

Source file was:

include <gperftools/heap-profiler.h>

int main(int,char*[]) { HeapProfilerStart("profiler"); return 0; }

[benmwebb]

You are going to run into an endless array of problems trying to compile an ancient version of IMP against modern versions of everything else. I strongly recommend you use the latest version of IMP instead. The cmake output in your last comment is to be expected however, and is normal - it's just testing for features of your system (which you don't have).

[vas2201]

I want to try with imp 2.8.0, but I have to copy the fftgen source code in application folder of imp-2.3.0 that has given by Dr.Magnus Andersson lab to generate the form factor file from SAX data. I didn't find the application folder in 2.8.0 version. could you please let me know that where Can i copy fftgen source code file in imp-2.8.0 ?. so that i can fix the problem.

[benmwebb]

You'll have to ask the fftgen folks - this is not our code and I was previously unaware of it. But applications/fftgen/foo.cpp in old IMP would roughly correspond to modules/saxs/bin/foo.cpp in modern IMP.

[vas2201]

I agree with you! I have contacted them recently. They suggested me to copy in application folder imp-2.3.0 and recompile the imp-2.30. however, I have the issues with the imp-2.3.0 version installation. they are not using imp2.8.0 version to generate the form factor file. the ffgen_src contain cmakelist.txt, dependencies.py and ffgen.cpp files. I am not quite sure that where these files go in imp2.8.0, if you have any idea about it, please suggest to me. otherwise, i will give-up this installation. Thanking you for your great support and time.

[vas2201]

I tried to install imp-2.8.0. I copied these files in respective folders in modules/saxs/bin/sax cmakelist.txt, dependencies.py and ffgen.cpp. I end up with more or similar error that I had previously encountered an error as following! How can i overcome this error ?

error : subprocess failed with return code 1: swig -MM -Iinclude -Iswig -ignoremissing -I/usr/local/include swig/IMP_saxs.i Unable to find file 'swig/IMP_saxs.i'. CMake Error at modules/saxs/pyext/CMakeLists.txt:64 (file): file STRINGS file "/Users/srinivas/Desktop/Software/imp/imp-2.8.0/build/src/saxs_swig.deps" cannot be read.

-- Running setup_imppy -- Documentation disabled as doxygen not found -- Configuring incomplete, errors occurred! See also "/Users/srinivas/Desktop/Software/imp/imp-2.8.0/build/CMakeFiles/CMakeOutput.log". See also "/Users/srinivas/Desktop/Software/imp/imp-2.8.0/build/CMakeFiles/CMakeError.log".

Cmake error log :

Source file was:

include <gperftools/heap-checker.h>

int main(int,char*[]) { new HeapLeakChecker("profiler"); return 0; } Performing C++ SOURCE FILE Test TCMalloc_HeapProfiler_found failed with the following output: Change Dir: /Users/srinivas/Desktop/Software/imp/imp-2.8.0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_2a2aa/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_2a2aa.dir/build.make CMakeFiles/cmTC_2a2aa.dir/build Building CXX object CMakeFiles/cmTC_2a2aa.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -I/usr/local/include -w -DTCMalloc_HeapProfiler_found -o CMakeFiles/cmTC_2a2aa.dir/src.cxx.o -c /Users/srinivas/Desktop/Software/imp/imp-2.8.0/build/CMakeFiles/CMakeTmp/src.cxx Linking CXX executable cmTC_2a2aa /usr/local/Cellar/cmake/3.10.0/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2a2aa.dir/link.txt --verbose=1 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -w -DTCMalloc_HeapProfiler_found -Wl,-search_paths_first -Wl,-headerpad_max_install_names -framework CoreFoundation CMakeFiles/cmTC_2a2aa.dir/src.cxx.o -o cmTC_2a2aa Undefined symbols for architecture x86_64: "_HeapProfilerStart", referenced from: _main in src.cxx.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[1]: [cmTC_2a2aa] Error 1 make: [cmTC_2a2aa/fast] Error 2

Source file was:

include <gperftools/heap-profiler.h>

int main(int,char*[]) { HeapProfilerStart("profiler"); return 0; } Performing C++ SOURCE FILE Test OpenCV22_found failed with the following output: Change Dir: /Users/srinivas/Desktop/Software/imp/imp-2.8.0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_97317/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_97317.dir/build.make CMakeFiles/cmTC_97317.dir/build Building CXX object CMakeFiles/cmTC_97317.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -I/usr/local/include -w -DOpenCV22_found -o CMakeFiles/cmTC_97317.dir/src.cxx.o -c /Users/srinivas/Desktop/Software/imp/imp-2.8.0/build/CMakeFiles/CMakeTmp/src.cxx /Users/srinivas/Desktop/Software/imp/imp-2.8.0/build/CMakeFiles/CMakeTmp/src.cxx:10:2: error: "Version is not at least 2.2"

error "Version is not at least 2.2"

^ 1 error generated. make[1]: [CMakeFiles/cmTC_97317.dir/src.cxx.o] Error 1 make: [cmTC_97317/fast] Error 2

Source file was:

include <opencv2/core/core.hpp>

include <opencv2/imgproc/imgproc.hpp>

include <opencv2/highgui/highgui.hpp>

include <opencv2/core/version.hpp>

int main(int,char*[]) {

if CV_MAJOR_VERSION==2 && CV_MINOR_VERSION>=2

new cv::Mat();

else

error "Version is not at least 2.2"

endif

return 0; }

[benmwebb]

As I said before, these are configure checks and so are not genuine errors.

[vas2201]

Thanks for your reply! if i overlook this error and proceed with make -j 16 command. I am getting following error.

srinivas@tmp002500ee0565%make -j 16 [ 0%] Computing version number [ 0%] Built target IMP-containers [ 0%] Built target IMP.test-all-header [ 0%] Built target IMP.kmeans-all-header [ 0%] Built target IMP.mpi-all-header [ 0%] Built target IMP.display-all-header [ 0%] Built target IMP.parallel-all-header [ 0%] Built target IMP.gsl-all-header [ 0%] Built target IMP.modeller-all-header [ 0%] Built target IMP.benchmark-all-header [ 0%] Built target IMP.cgal-all-header [ 0%] Built target IMP.score_functor-all-header [ 0%] Built target IMP.statistics-all-header [ 0%] Built target IMP.core-all-header [ 0%] Built target IMP.kernel-all-header [ 0%] Built target IMP-version [ 0%] Built target IMP.container-all-header [ 0%] Built target IMP.algebra-all-header [ 0%] Built target RMF-embed [ 0%] Built target RMF-decorators [ 1%] Built target IMP.em2d-version [ 1%] Built target IMP.example-version [ 1%] Built target IMP.multifit-version [ 1%] Built target IMP.symmetry-all-header [ 1%] Built target IMP.atom-all-header [ 1%] Built target IMP.pepdock-version [ 1%] Built target IMP.scratch-all-header [ 1%] Built target IMP.em-all-header [ 1%] Built target IMP.misc-all-header [ 2%] Built target IMP.pmi-version [ 2%] Built target IMP.domino-all-header [ 2%] Built target IMP.rotamer-all-header [ 2%] Built target IMP.rmf-all-header [ 2%] Built target IMP.kinematics-all-header [ 2%] Built target IMP.isd-all-header [ 2%] Built target IMP.foxs-all-header [ 2%] Built target IMP.multi_state-all-header [ 2%] Built target IMP.em2d-all-header [ 2%] Built target IMP.saxs_merge-version [ 2%] Built target IMP.example-all-header [ 2%] Running SWIG on saxs [ 2%] Built target IMP.EMageFit-version [ 2%] Built target IMP.multifit-all-header [ 2%] Built target IMP.cnmultifit-version [ 2%] Built target IMP.integrative_docking-version [ 2%] Built target IMP.spb-version [ 2%] Built target IMP.pepdock-all-header [ 2%] Built target IMP.kernel-version [ 2%] Built target IMP.benchmark-version [ 2%] Built target IMP.cgal-version [ 2%] Built target IMP.kmeans-version [ 2%] Built target IMP.mpi-version [ 2%] Built target IMP.parallel-version [ 3%] Built target IMP.test-version [ 3%] Built target IMP.algebra-version [ 3%] Built target IMP.display-version [ 3%] Built target IMP.gsl-version [ 3%] Built target IMP.statistics-version [ 3%] Built target IMP.score_functor-version [ 3%] Built target IMP.core-version [ 3%] Built target IMP.container-version [ 3%] Built target IMP.modeller-version [ 3%] Built target IMP.pmi-all-header [ 3%] Built target IMP.symmetry-version [ 3%] Built target IMP.saxs_merge-all-header [ 3%] Built target IMP.EMageFit-all-header [ 3%] Built target IMP.cnmultifit-all-header [ 3%] Built target IMP.atom-version [ 3%] Built target IMP.integrative_docking-all-header [ 3%] Built target IMP.spb-all-header [ 3%] Built target IMP.scratch-version Unable to find file '/Users/srinivas/Desktop/Software/imp/imp-2.8.0/build/swig/IMP_saxs.i'.

Traceback (most recent call last): File "/Users/srinivas/Desktop/Software/imp/imp-2.8.0/tools/build/make_swig_wrapper.py", line 136, in main() File "/Users/srinivas/Desktop/Software/imp/imp-2.8.0/tools/build/make_swig_wrapper.py", line 129, in main run_swig(outputdir, options) File "/Users/srinivas/Desktop/Software/imp/imp-2.8.0/tools/build/make_swig_wrapper.py", line 57, in run_swig options.module) File "/Users/srinivas/Desktop/Software/imp/imp-2.8.0/tools/build/make_swig_wrapper.py", line 74, in patch_py_wrapper with open(infile) as infh: IOError: [Errno 2] No such file or directory: 'src/saxs_swig/IMP.saxs.py' [ 4%] Built target IMP.em-version [ 5%] Built target IMP.rmf-version [ 5%] Built target IMP.misc-version make[2]: [src/saxs_swig/wrap.cpp] Error 1 make[1]: [modules/saxs/pyext/CMakeFiles/IMP.saxs-python.dir/all] Error 2 make[1]: Waiting for unfinished jobs.... [ 5%] Built target IMP.rotamer-version [ 5%] Built target IMP.domino-version [ 5%] Built target IMP.foxs-version [ 5%] Built target IMP.isd-version [ 5%] Built target IMP.kinematics-version [ 6%] Built target IMP.multi_state-version [ 7%] Linking CXX shared library ../../../lib/libimp_kernel.dylib [ 8%] Built target IMP.kernel-lib [ 19%] Built target RMF-lib make: [all] Error 2

[benmwebb]

You can't just ignore cmake errors (in this case it looks like it failed to run SWIG), but the file you showed earlier is not the right place to see them.