Fix gene_prab and accessory_pca - Githubissues

salvadorlab / mbovpan

Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.

4 stars 1 forks source link

Fix gene_prab and accessory_pca #15

Closed noahaus closed 1 year ago

noahaus commented 1 year ago

I still think these processes should be nextflow scripts, but they should be easier to start and test out. I'll work towards that

noahaus commented 1 year ago

gene_prab is semantically working, but its logically not giving the output that it needs to - will need to focus more on the Rscript later

noahaus commented 1 year ago

focused entirely on this today - I need to get the program to actually output the dendrogram, but it isn't doing so successfully? When I log back on, I need to see if I can just get anything to print, and then perhaps work up from there - sweaty coding session with lofi music tonight.

noahaus commented 1 year ago

Okay, so now I figured out the gene_prab set up for making the figure. a ton of commits later and I was able to recreate the figure

noahaus commented 1 year ago

Accessory pca script also working!

noahaus commented 1 year ago

Closing this issue, the scripts can be ran individually now so the functionality is intact