Downloading via bioconda

[noahaus]

as the subject line suggests, I feel like installation is not user friendly. Adding on bioconda might alleviate some issues.

[noahaus]

making some progress with updating the meta.yaml file, adding the necessary parameters and specifications is a game of trial and error. Currently trying to test if the command can be tested out

[noahaus]

TEST END: /home/n/noahlegall/.conda/envs/conda_build/conda-bld/linux-64/mbovpan-1.0.0-0.tar.bz2
Renaming work directory '/home/n/noahlegall/.conda/envs/conda_build/conda-bld/mbovpan_1690231845096/work' to '/home/n/noahlegall/.conda/envs/conda_build/conda-bld/mbovpan_1690231845096/work_moved_mbovpan-1.0.0-0_linux-64_main_build_loop'        
INFO:conda_build.utils:Renaming work directory '/home/n/noahlegall/.conda/envs/conda_build/conda-bld/mbovpan_1690231845096/work' to '/home/n/noahlegall/.conda/envs/conda_build/conda-bld/mbovpan_1690231845096/work_moved_mbovpan-1.0.0-0_linux-64_main_build_loop'
shutil.move(work)=/home/n/noahlegall/.conda/envs/conda_build/conda-bld/mbovpan_1690231845096/work, dest=/home/n/noahlegall/.conda/envs/conda_build/conda-bld/mbovpan_1690231845096/work_moved_mbovpan-1.0.0-0_linux-64_main_build_loop)
INFO:conda_build.utils:shutil.move(work)=/home/n/noahlegall/.conda/envs/conda_build/conda-bld/mbovpan_1690231845096/work, dest=/home/n/noahlegall/.conda/envs/conda_build/conda-bld/mbovpan_1690231845096/work_moved_mbovpan-1.0.0-0_linux-64_main_build_loop)
# Automatic uploading is disabled
# If you want to upload package(s) to anaconda.org later, type:

# To have conda build upload to anaconda.org automatically, use
# conda config --set anaconda_upload yes
anaconda upload \
    /home/n/noahlegall/.conda/envs/conda_build/conda-bld/linux-64/mbovpan-1.0.0-0.tar.bz2
anaconda_upload is not set.  Not uploading wheels: []

INFO :: The inputs making up the hashes for the built packages are as follows:
{
  "mbovpan-1.0.0-0": {
    "recipe": {}
  }
}

####################################################################################
Resource usage summary:

Total time: 0:13:01.2
CPU usage: sys=0:00:01.8, user=0:00:29.9
Maximum memory usage observed: 430.3M
Total disk usage observed (not including envs): 868.5K

####################################################################################
Source and build intermediates have been left in /home/n/noahlegall/.conda/envs/conda_build/conda-bld.
There are currently 7 accumulated.
To remove them, you can run the ```conda build purge``` command

[noahaus]

https://anaconda.org/noahlegall/mbovpan

[noahaus]

It seems like the conda build is too heavy for the program - I should go and add the conda instructions in their appropriate processes

[noahaus]

Should test to see if this will work - save that for later

[noahaus]

downloaded SRA-toolkit to my USF CIRCE account - downloading the sequences now checking to see if the conda download will at least initiate the analysis.

Okay realizing now that just because its on conda does not mean I can access the the file (which is a surprise)

[noahaus]

https://nextflow.slack.com/archives/C02T98A23U7/p1692045630061849

[noahaus]

Was able to get mamba up and running!