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salvadorlab / mbovpan

Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.

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Open noahaus opened 1 year ago

noahaus commented 1 year ago

[x] Download using instructions on README.md
[x] Test SNP mode
[x] Test PAN mode
[x] update README
[ ] clean up the 'main' branch

noahaus commented 1 year ago

panaroo is not able to be read for some reason - I need to investigate why

noahaus commented 11 months ago

panaroo added to the main environment testing pan mode now to see if the code will break

noahaus commented 11 months ago

I need to specify to the user that pan mode should be ran in a high memory capability mode.

noahaus commented 11 months ago

download instructions work for me - will now need to update the quickstart section of the README