scoary and pangenome curve output

salvadorlab / mbovpan

Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.

4 stars 1 forks source link

scoary and pangenome curve output #25

Closed noahaus closed 9 months ago

noahaus commented 10 months ago

work on the helper scripts for scoary and pangenome curve:

[x] scoary nextflow script
[x] pangenome curve from

noahaus commented 9 months ago

Working on a way to visualize the genes that were seen as important in scoary

noahaus commented 9 months ago

Scoary results showed a lot of "hypothetical proteins" being highly important to distinguish between the two species

Host_25_01_2024_1749.csv

I was able to tie these genes to potential orthologs using blast with defaults scoary_blast_results.txt

noahaus commented 9 months ago

Was able to generate code for the pangenome curve and added as a helper script to mbovpan

noahaus commented 9 months ago

smoothed out the lines