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salvadorlab / mbovpan

Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.
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Standardizing Naming throughout the pipeline. #8

Closed noahaus closed 1 year ago

noahaus commented 2 years ago

The addition of new scripts and linking metadata means the naming must be deterministic every run of the pipeline. clean up the code in mbovpan so that these links can be made automatically without any user polishing.

noahaus commented 2 years ago

I'm finding that a random '1' is added at the end of the pipeline, I will need to pinpoint where this happens

noahaus commented 1 year ago

It actually happens on the first fastp process, will need to delve further

noahaus commented 1 year ago

Rectified - it was due to a wildcard mishap