It returns the error mentioned above. I have checked the requirements bolotie needs, and my environment has already met all of the requirements to run the python file according to your script.
I have also upgraded the pip environment to the latest but the error still exists.
Could you tell me what happened or whether I have to modify some words in the python file to meet my env?
Besides, as the description of the tool talked about in the introduction, it is optimized for virus, so I am wondering if it is possible to detect the variation or run for a fungal genome? (in single-chromosome way)
It would be appreciated that this issue got answered. Thank
Hi,
When I use the run.py, it always return this expectation to me.
TypeError: expected str, bytes or os.PathLike object, not NoneType
As I use the examples to have a test:
./run.py --input seqs.fa --reference ref.fa --outdir example_output
It returns the error mentioned above. I have checked the requirements bolotie needs, and my environment has already met all of the requirements to run the python file according to your script. I have also upgraded the pip environment to the latest but the error still exists.
Could you tell me what happened or whether I have to modify some words in the python file to meet my env? Besides, as the description of the tool talked about in the introduction, it is optimized for virus, so I am wondering if it is possible to detect the variation or run for a fungal genome? (in single-chromosome way) It would be appreciated that this issue got answered. Thank